View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_high_41 (Length: 301)
Name: NF19836_high_41
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_high_41 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 18 - 286
Target Start/End: Original strand, 8390574 - 8390840
Alignment:
| Q |
18 |
aatgatgttccctaatcttacttaaggtcctccttgatcattcattagcnnnnnnnngaagcggaattctacaatatcttaaaagcaatttcatgcatta |
117 |
Q |
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| T |
8390574 |
aatgatgttccctaatcttaattacggtcctacttgatcattcattag--aaaaaaagaggcggaattctacaatatcttaaaagcaaattcatgcatta |
8390671 |
T |
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| Q |
118 |
cataagagtgagacacttgtaagttctagaacgtgttctacaatatttcaaagtcattttaaggagaagactcttgtttaaaagaggtggagttttaact |
217 |
Q |
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| T |
8390672 |
cataagagtgagacacctgtaaattctagaacgtgttctacaatatttcaaagtcattttaaggagaagactcttgtttaaaagaggtggaattctaact |
8390771 |
T |
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| Q |
218 |
atatagatttacgttgatgctgattatgcaagtttcgtaagtgacatgagatatactttaggttattgt |
286 |
Q |
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| T |
8390772 |
atacagacttacattgatgctgattatgcaggtttcgtaagtgacatgagatatactttaggttattgt |
8390840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 125 - 208
Target Start/End: Original strand, 27470115 - 27470198
Alignment:
| Q |
125 |
gtgagacacttgtaagttctagaacgtgttctacaatatttcaaagtcattttaaggagaagactcttgtttaaaagaggtgga |
208 |
Q |
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||||||||| || || || |||| ||||||||| |||| | ||||||| | ||||||| ||||||||||||||||||||||| |
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| T |
27470115 |
gtgagacacatgaaaattgtagattgtgttctacgatatctgaaagtcactccaaggagaggactcttgtttaaaagaggtgga |
27470198 |
T |
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