View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19836_high_42 (Length: 293)

Name: NF19836_high_42
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19836_high_42
NF19836_high_42
[»] chr2 (2 HSPs)
chr2 (1-293)||(4568741-4569057)
chr2 (6-74)||(38576973-38577041)
[»] chr1 (3 HSPs)
chr1 (16-84)||(45136764-45136832)
chr1 (37-92)||(67712-67767)
chr1 (2-76)||(34601641-34601715)
[»] chr7 (2 HSPs)
chr7 (34-83)||(8448076-8448125)
chr7 (54-99)||(758029-758074)
[»] chr3 (2 HSPs)
chr3 (63-122)||(46303294-46303353)
chr3 (16-78)||(54437604-54437666)
[»] chr8 (1 HSPs)
chr8 (16-84)||(39280914-39280982)
[»] chr5 (1 HSPs)
chr5 (2-98)||(972776-972872)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 4569057 - 4568741
Alignment:
Q  1 atttgatgttcttaggatgaaaataataactcg-ttataataatagagatgaagaaaatgagttttttctttgataggggtaaatcacctccaattcatc 99  Q
    |||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  4569057 atttgatgtttttaggatgaaaataataactcggttataataatagagatgaagaaaatgagttttttctttgataggtataaatcacctccaattcatc 4568958  T
Q  100 caagagtaatgtagaaaaaacctt-----------------caattggcgatatatttagggacaaagaataaatagtatttaaattta------cgtga 176  Q
    ||||| ||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||||||||||||      |||||    
T  4568957 caagactaatgtagaaaaaaccttaatttttagaggttattcaattggcgatatatttagggacaaagaataaatagtatttaaatttaaatttacgtga 4568858  T
Q  177 tgacatgatgtctgctctaaccatggtaattgctactacagggtaaaggcctcaaaagtggaggataatgtgaaggtgaagtttgcatactcaatcaata 276  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  4568857 tgacatgatgtctgctctaaccatggtaattgctactacagggtaaaggcctcaaaagtggaggataatgagaaggtgaagtttgcatactcaatcaata 4568758  T
Q  277 tacgtagactagtaaag 293  Q
    |||||||||||||||||    
T  4568757 tacgtagactagtaaag 4568741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 74
Target Start/End: Original strand, 38576973 - 38577041
Alignment:
Q  6 atgttcttaggatgaaaataataactcgttataataatagagatgaagaaaatgagttttttctttgat 74  Q
    ||||||||  |||||||||  |||||  |||||| |||| | |||||||||||||| ||||||||||||    
T  38576973 atgttctttagatgaaaatggtaactgattataaaaataaatatgaagaaaatgagatttttctttgat 38577041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 45136764 - 45136832
Alignment:
Q  16 gatgaaaataataactcgttataataatagagatgaagaaaatgagttttttctttgataggggtaaat 84  Q
    ||||||||||||||||  || ||| |||| |||||||||||||||| ||||||||||||||||||||||    
T  45136764 gatgaaaataataactgattgtaagaataaagatgaagaaaatgagatttttctttgataggggtaaat 45136832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 37 - 92
Target Start/End: Complemental strand, 67767 - 67712
Alignment:
Q  37 taataatagagatgaagaaaatgagttttttctttgataggggtaaatcacctcca 92  Q
    |||||||| ||||||||||||||||| ||||||||||||| ||||||| |||||||    
T  67767 taataataaagatgaagaaaatgagtcttttctttgatagaggtaaattacctcca 67712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 2 - 76
Target Start/End: Original strand, 34601641 - 34601715
Alignment:
Q  2 tttgatgttcttaggatgaaaataataactcgttataataatagagatgaagaaaatgagttttttctttgatag 76  Q
    ||||||||| ||  ||||||||||||||||  |  ||| |||| |||||||||||||||| ||||||||| ||||    
T  34601641 tttgatgtttttgagatgaaaataataactaatcgtaagaataaagatgaagaaaatgagatttttcttttatag 34601715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 34 - 83
Target Start/End: Original strand, 8448076 - 8448125
Alignment:
Q  34 ttataataatagagatgaagaaaatgagttttttctttgataggggtaaa 83  Q
    |||| |||||| |||||||||||||||||||||||||||||||| |||||    
T  8448076 ttatcataataaagatgaagaaaatgagttttttctttgataggtgtaaa 8448125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 99
Target Start/End: Original strand, 758029 - 758074
Alignment:
Q  54 aaaatgagttttttctttgataggggtaaatcacctccaattcatc 99  Q
    |||||||| |||||||||||||||||||||| || | |||||||||    
T  758029 aaaatgagatttttctttgataggggtaaattacatgcaattcatc 758074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 63 - 122
Target Start/End: Complemental strand, 46303353 - 46303294
Alignment:
Q  63 tttttctttgataggggtaaatcacctccaattcatccaagagtaatgtagaaaaaacct 122  Q
    ||||||||||||||| |||||| ||  |||||||||| | || |||||||||||||||||    
T  46303353 tttttctttgataggagtaaattactcccaattcatcaaggaataatgtagaaaaaacct 46303294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 16 - 78
Target Start/End: Complemental strand, 54437666 - 54437604
Alignment:
Q  16 gatgaaaataataactcgttataataatagagatgaagaaaatgagttttttctttgataggg 78  Q
    |||||||||  ||| | ||| |||||||| |||||| |||||||||||||| |||||||||||    
T  54437666 gatgaaaatggtaatttgttgtaataataaagatgaggaaaatgagtttttcctttgataggg 54437604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 39280982 - 39280914
Alignment:
Q  16 gatgaaaataataactcgttataataatagagatgaagaaaatgagttttttctttgataggggtaaat 84  Q
    |||||||||  |||||  || ||| |||| |||||||||||| | | ||||||||||||||||||||||    
T  39280982 gatgaaaatggtaactgattttaagaataaagatgaagaaaaggggatttttctttgataggggtaaat 39280914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 98
Target Start/End: Complemental strand, 972872 - 972776
Alignment:
Q  2 tttgatgttcttaggatgaaaataataactcgttataataatagagatgaagaaaatgagttttttctttgataggggtaaatcacctccaattcat 98  Q
    ||||||||||||  ||||||||| ||||||  || ||| |||| ||| ||| ||||||| |||||||||||| | || ||||| ||| |||| ||||    
T  972872 tttgatgttcttgagatgaaaatgataactaattttaaaaataaagaggaaaaaaatgaattttttctttgaaatggataaattacccccaaatcat 972776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University