View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_high_43 (Length: 283)
Name: NF19836_high_43
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_high_43 |
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Alignment Details
Target: chr5 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 3 - 267
Target Start/End: Complemental strand, 2251418 - 2251154
Alignment:
| Q |
3 |
catgtccaagaatattatagcttcccctaatatcattgtaacatttttccttttatttttatgtacattttcatcctctacccgtacttccttcgactca |
102 |
Q |
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|||| |||| || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2251418 |
catggccaaaaacattatagcttcccccaatatcattgtaacatttttccttttatttttatgtacattttcatcctctacccgtacttccttcgactca |
2251319 |
T |
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| Q |
103 |
tccgagattaataatgtcaatgtcgacgacattgaccaaaccaaccatgattcatcatttcctatgtctgttaagaatcctcttgatcaaaactctattt |
202 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2251318 |
tccgagattaataatgtcaatgtcgacgacattgaccaaaccaaccatgattcatcatttcctatgtctgttaagaatcctcttgatcaaaactctattt |
2251219 |
T |
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| Q |
203 |
tcctccctagtgagaatctacccgaacctgattccaaacatgcaactctagtccaatatgatgaa |
267 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2251218 |
tcctccctagtgagaatctacccgaacctgattccaaacatgcaactctagtccaatatgatgaa |
2251154 |
T |
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