View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19836_high_58 (Length: 245)

Name: NF19836_high_58
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19836_high_58
NF19836_high_58
[»] chr4 (12 HSPs)
chr4 (9-69)||(10978233-10978293)
chr4 (9-69)||(34769442-34769502)
chr4 (9-69)||(47128097-47128157)
chr4 (106-176)||(34769556-34769625)
chr4 (23-69)||(13459904-13459950)
chr4 (9-68)||(9579360-9579419)
chr4 (9-68)||(9585055-9585114)
chr4 (9-68)||(48208566-48208626)
chr4 (16-69)||(17679335-17679388)
chr4 (195-227)||(34769639-34769671)
chr4 (106-146)||(5129006-5129046)
chr4 (106-146)||(32915300-32915340)
[»] chr2 (6 HSPs)
chr2 (9-69)||(34693260-34693320)
chr2 (9-69)||(34715672-34715732)
chr2 (9-69)||(5952840-5952900)
chr2 (16-69)||(40636076-40636129)
chr2 (106-146)||(34693150-34693190)
chr2 (106-146)||(34715562-34715602)
[»] chr1 (2 HSPs)
chr1 (9-69)||(5315872-5315932)
chr1 (9-69)||(50880666-50880726)
[»] chr3 (5 HSPs)
chr3 (16-69)||(18372146-18372199)
chr3 (9-69)||(3954745-3954805)
chr3 (106-146)||(27078841-27078881)
chr3 (106-146)||(27084638-27084678)
chr3 (106-146)||(42098701-42098741)
[»] chr5 (4 HSPs)
chr5 (9-69)||(30853383-30853443)
chr5 (26-69)||(16592748-16592791)
chr5 (106-147)||(36188042-36188083)
chr5 (106-146)||(2274801-2274841)
[»] chr8 (1 HSPs)
chr8 (9-69)||(41878285-41878344)
[»] chr7 (1 HSPs)
chr7 (106-146)||(10955381-10955421)


Alignment Details
Target: chr4 (Bit Score: 53; Significance: 2e-21; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 10978293 - 10978233
Alignment:
Q  9 gaagaatatcggtaatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 69  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10978293 gaagaaaatcggtgatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 10978233  T

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Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 34769442 - 34769502
Alignment:
Q  9 gaagaatatcggtaatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 69  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34769442 gaagaaaatcggtgatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 34769502  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 47128157 - 47128097
Alignment:
Q  9 gaagaatatcggtaatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 69  Q
    |||||| |||||| ||||||||||||||||||||||||||||||||||||||| |||||||    
T  47128157 gaagaaaatcggtgatgagagcgaggaaacgcgtttcaacttttgtgagggaacgaaataa 47128097  T

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Target: chr4; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 106 - 176
Target Start/End: Original strand, 34769556 - 34769625
Alignment:
Q  106 cccaactcgtttgagctatttgcaccctctcaggaacgccctctggtaaccacctctttctctttgcatcg 176  Q
    ||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||| ||||||||||||||    
T  34769556 cccaactcgtttgagctatttgcaccc-ctcagaaacgccctccgataaccacctccttctctttgcatcg 34769625  T

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Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 23 - 69
Target Start/End: Complemental strand, 13459950 - 13459904
Alignment:
Q  23 atgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 69  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||    
T  13459950 atgagagcgaggaaacgcgtttcaacttttgtgagagaatgaaataa 13459904  T

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Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 9579360 - 9579419
Alignment:
Q  9 gaagaatatcggtaatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaata 68  Q
    |||||| |||||| ||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  9579360 gaagaaaatcggtgatgagagtgaggaaacgtgtttcaacttttgtgagcgaatgaaata 9579419  T

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Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 68
Target Start/End: Original strand, 9585055 - 9585114
Alignment:
Q  9 gaagaatatcggtaatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaata 68  Q
    |||||| |||||| ||||||| ||||||||| ||||||||||||||||| ||||||||||    
T  9585055 gaagaaaatcggtgatgagagtgaggaaacgtgtttcaacttttgtgagcgaatgaaata 9585114  T

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Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 68
Target Start/End: Complemental strand, 48208626 - 48208566
Alignment:
Q  9 gaagaatatcggtaatgagagcgaggaaacgcgtttcaac-ttttgtgagggaatgaaata 68  Q
    |||||| |||||| ||||||||||||||| | |||||||| ||||||||||||||||||||    
T  48208626 gaagaaaatcggtgatgagagcgaggaaatgtgtttcaactttttgtgagggaatgaaata 48208566  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 17679388 - 17679335
Alignment:
Q  16 atcggtaatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 69  Q
    |||||| ||||||||||||||||  |||| ||||||||||||||||||| ||||    
T  17679388 atcggtgatgagagcgaggaaacatgtttaaacttttgtgagggaatgacataa 17679335  T

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Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 195 - 227
Target Start/End: Original strand, 34769639 - 34769671
Alignment:
Q  195 gatatatcacttattgagtcctgataaatatat 227  Q
    |||||||||||||||||||||||||||||||||    
T  34769639 gatatatcacttattgagtcctgataaatatat 34769671  T

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Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 5129006 - 5129046
Alignment:
Q  106 cccaactcgtttgagctatttgcaccctctcaggaacgccc 146  Q
    |||| |||||||||||| ||||||||| |||||||||||||    
T  5129006 cccagctcgtttgagctgtttgcaccccctcaggaacgccc 5129046  T

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Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 32915340 - 32915300
Alignment:
Q  106 cccaactcgtttgagctatttgcaccctctcaggaacgccc 146  Q
    ||||||||||||||||| ||||||||| |||||| ||||||    
T  32915340 cccaactcgtttgagctgtttgcaccccctcagggacgccc 32915300  T

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Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 34693320 - 34693260
Alignment:
Q  9 gaagaatatcggtaatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 69  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34693320 gaagaaaatcggtgatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 34693260  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 34715732 - 34715672
Alignment:
Q  9 gaagaatatcggtaatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 69  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34715732 gaagaaaatcggtgatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 34715672  T

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Target: chr2; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 5952840 - 5952900
Alignment:
Q  9 gaagaatatcggtaatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 69  Q
    |||||| || ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  5952840 gaagaaaattggtgatgagagcaaggaaacgcgtttcaacttttgtgagggaatgaaataa 5952900  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 40636129 - 40636076
Alignment:
Q  16 atcggtaatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 69  Q
    |||||| || |||| |||||||||||||| ||||||||||||||||||||||||    
T  40636129 atcggtgataagagtgaggaaacgcgttttaacttttgtgagggaatgaaataa 40636076  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 34693190 - 34693150
Alignment:
Q  106 cccaactcgtttgagctatttgcaccctctcaggaacgccc 146  Q
    ||||||||||||||||| ||||||||| |||||| ||||||    
T  34693190 cccaactcgtttgagctgtttgcaccccctcagggacgccc 34693150  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 34715602 - 34715562
Alignment:
Q  106 cccaactcgtttgagctatttgcaccctctcaggaacgccc 146  Q
    ||||||||||||||||| ||||||||| |||||| ||||||    
T  34715602 cccaactcgtttgagctgtttgcaccccctcagggacgccc 34715562  T

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Target: chr1 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 5315932 - 5315872
Alignment:
Q  9 gaagaatatcggtaatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 69  Q
    |||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  5315932 gaagaaaatcggtgatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 5315872  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 50880726 - 50880666
Alignment:
Q  9 gaagaatatcggtaatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 69  Q
    |||||| || ||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  50880726 gaagaaaattggtgatgagagcgaggaaacgcgtttcaacttttgtcagggaatgaaataa 50880666  T

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Target: chr3 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 16 - 69
Target Start/End: Complemental strand, 18372199 - 18372146
Alignment:
Q  16 atcggtaatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 69  Q
    |||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  18372199 atcggtgatgagagcgaggaaacgcatttcaacttttgtgagggaatgaaataa 18372146  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 69
Target Start/End: Original strand, 3954745 - 3954805
Alignment:
Q  9 gaagaatatcggtaatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 69  Q
    |||||| |||||| ||||||||||||||||  |||||||||||||||| ||||||||||||    
T  3954745 gaagaaaatcggtgatgagagcgaggaaacatgtttcaacttttgtgaaggaatgaaataa 3954805  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 27078841 - 27078881
Alignment:
Q  106 cccaactcgtttgagctatttgcaccctctcaggaacgccc 146  Q
    |||| |||||||||||| ||||||||| |||||||||||||    
T  27078841 cccagctcgtttgagctgtttgcaccccctcaggaacgccc 27078881  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Original strand, 27084638 - 27084678
Alignment:
Q  106 cccaactcgtttgagctatttgcaccctctcaggaacgccc 146  Q
    |||| |||||||||||| ||||||||| |||||||||||||    
T  27084638 cccagctcgtttgagctgtttgcaccccctcaggaacgccc 27084678  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 42098741 - 42098701
Alignment:
Q  106 cccaactcgtttgagctatttgcaccctctcaggaacgccc 146  Q
    ||||||||||||||||| ||||||||| |||||| ||||||    
T  42098741 cccaactcgtttgagctgtttgcaccccctcagggacgccc 42098701  T

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Target: chr5 (Bit Score: 45; Significance: 9e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 30853443 - 30853383
Alignment:
Q  9 gaagaatatcggtaatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 69  Q
    |||||| || ||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  30853443 gaagaaaattggtgatgagagcaaggaaacgcgtttcaacttttgtgagggaatgaaataa 30853383  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 26 - 69
Target Start/End: Original strand, 16592748 - 16592791
Alignment:
Q  26 agagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 69  Q
    |||| |||||||||||||||||||||||||||||||||||||||    
T  16592748 agagtgaggaaacgcgtttcaacttttgtgagggaatgaaataa 16592791  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 106 - 147
Target Start/End: Original strand, 36188042 - 36188083
Alignment:
Q  106 cccaactcgtttgagctatttgcaccctctcaggaacgccct 147  Q
    ||||||||||||||||| ||||||||| |||||| |||||||    
T  36188042 cccaactcgtttgagctgtttgcaccccctcagggacgccct 36188083  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 2274841 - 2274801
Alignment:
Q  106 cccaactcgtttgagctatttgcaccctctcaggaacgccc 146  Q
    |||||||| |||||||| ||||||||| |||||||||||||    
T  2274841 cccaactcatttgagctgtttgcaccccctcaggaacgccc 2274801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 69
Target Start/End: Complemental strand, 41878344 - 41878285
Alignment:
Q  9 gaagaatatcggtaatgagagcgaggaaacgcgtttcaacttttgtgagggaatgaaataa 69  Q
    |||||| |||| | ||||||| ||||||| |||||||||||||||||||||||||||||||    
T  41878344 gaagaaaatcgatgatgagag-gaggaaatgcgtttcaacttttgtgagggaatgaaataa 41878285  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 146
Target Start/End: Complemental strand, 10955421 - 10955381
Alignment:
Q  106 cccaactcgtttgagctatttgcaccctctcaggaacgccc 146  Q
    ||||||||||||||||||||||||||| |||| | ||||||    
T  10955421 cccaactcgtttgagctatttgcaccccctcaaggacgccc 10955381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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