View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_high_6 (Length: 584)
Name: NF19836_high_6
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 504; Significance: 0; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 504; E-Value: 0
Query Start/End: Original strand, 16 - 551
Target Start/End: Original strand, 36299621 - 36300156
Alignment:
| Q |
16 |
attaaaacgaatatccaaataagtggttaaaaattaatattaggacatgatatgaccatatgaaatctgattagacatcttagtatttttacattgttag |
115 |
Q |
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| T |
36299621 |
attaaaacgaatatccaaataagtggttaaaaattaatattaggacatgatacgaccatatgaaatctgattagacatcttagtatttttacattgttag |
36299720 |
T |
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| Q |
116 |
tatattgtaattaatttctaatgtaaatataattctactaaccgtgatatgttctgacttgtagaacaagttaagggaccaggctgttttttacactctt |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36299721 |
tatattgtaattaatttctaatgtaaatataattctactaaccgtgatatgttctgacttgtagaacaagttatgggaccaggctgttttttacactctt |
36299820 |
T |
|
| Q |
216 |
tgtgatgattcgaggatggcttatggaaaatgggaatttgatccaatgaagataaagaatccactccctcacaaaagaaggccatttcatatttggcaag |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| ||||||||| |
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| T |
36299821 |
tgtgatgattcgaggatggcttatggaaaatgggaatttgatccaatgaagataaagaatccactccctcacaaaagaaggtcgtttcatttttggcaag |
36299920 |
T |
|
| Q |
316 |
gataagaagataagatttgtttcatggaagctgccttggatacaagatcatgaagttccagattgtggccatttgattttatgctataagagcatgtgtg |
415 |
Q |
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| T |
36299921 |
gataagaagataagatttgtttcatggaagctgccttggatacaagatcatgaagttccagattgtggccatttgattttatgctataagagcatgtgtg |
36300020 |
T |
|
| Q |
416 |
aggcaattttgagatcatctttgctattcaaagatgaattctaacaatacattctgtaatacaatttttgtgcaaatttgctgtataaattccacttaga |
515 |
Q |
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| T |
36300021 |
aggcaattttgagatcatcttttctattcaaagatgaattctaacaatacattttgtaatacaatttttgtgcaaatttgctgtataaactccacttaga |
36300120 |
T |
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| Q |
516 |
tctactaagtgatgagtcacattccttgttgttgag |
551 |
Q |
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| T |
36300121 |
tctactaagtgatgagtcacattccttgttgttgag |
36300156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 112 - 332
Target Start/End: Original strand, 36301284 - 36301504
Alignment:
| Q |
112 |
ttagtatattgtaattaatttctaatgtaaatataattctactaaccgtgatatgttctgacttgtagaacaagttaagggaccaggctgttttttacac |
211 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
36301284 |
ttagtatgttgtaattaatttctaatgtaaatataattctactaaccatgatatgttccgacttgtagaacaagttaagggaccgggctgttttttacac |
36301383 |
T |
|
| Q |
212 |
tctttgtgatgattcgaggatggcttatggaaaatgggaatttgatccaatgaagataaagaatccactccctcacaaaagaaggccatttcatatttgg |
311 |
Q |
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|| ||||||||||| |||| |||||||||||||||||||||||||||||||||| ||| ||||||| |||||| || |||||| |||||||||||||| |
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| T |
36301384 |
tcgttgtgatgattggagggtggcttatggaaaatgggaatttgatccaatgaaattaaggaatccattccctcccagaagaagttcatttcatatttgg |
36301483 |
T |
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| Q |
312 |
caaggataagaagataagatt |
332 |
Q |
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| T |
36301484 |
caaggatatgaagataagatt |
36301504 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 327 - 405
Target Start/End: Original strand, 36301522 - 36301600
Alignment:
| Q |
327 |
aagatttgtttcatggaagctgccttggatacaagatcatgaagttccagattgtggccatttgattttatgctataag |
405 |
Q |
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| T |
36301522 |
aagatttgtttcatggaagatgccttggatacaatatcatgaaattccagatggtggccatttgattatatgctataag |
36301600 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 234 - 328
Target Start/End: Original strand, 36297171 - 36297265
Alignment:
| Q |
234 |
gcttatggaaaatgggaatttgatccaatgaagataaagaatccactccctcacaaaagaaggccatttcatatttggcaaggataagaagataa |
328 |
Q |
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|||| |||||||||||||||||||||||||||| ||| |||||| ||||||||||| ||| |||||||||||||||||||| | |||||||| |
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| T |
36297171 |
gcttttggaaaatgggaatttgatccaatgaagctaagcaatccattccctcacaaacaaagttcatttcatatttggcaaggacatgaagataa |
36297265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 327 - 427
Target Start/End: Original strand, 36297287 - 36297387
Alignment:
| Q |
327 |
aagatttgtttcatggaagctgccttggatacaagatcatgaagttccagattgtggccatttgattttatgctataagagcatgtgtgaggcaattttg |
426 |
Q |
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||||||||||||| ||||||| || ||||||||| ||||||||||||||||| |||||||||||||| ||| ||| ||| | | |||||||| |||||| |
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| T |
36297287 |
aagatttgtttcagggaagctaccatggatacaatatcatgaagttccagatggtggccatttgattatatactacaagggtttatgtgaggctattttg |
36297386 |
T |
|
| Q |
427 |
a |
427 |
Q |
| |
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| |
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| T |
36297387 |
a |
36297387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 497 - 546
Target Start/End: Original strand, 36301696 - 36301745
Alignment:
| Q |
497 |
tgtataaattccacttagatctactaagtgatgagtcacattccttgttg |
546 |
Q |
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|||||||||| ||||||||||||||||||||||| || |||||||||||| |
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| T |
36301696 |
tgtataaatttcacttagatctactaagtgatgaatctcattccttgttg |
36301745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 151; Significance: 1e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 36 - 329
Target Start/End: Complemental strand, 48299503 - 48299209
Alignment:
| Q |
36 |
aagtggttaaaaattaatattaggacatgatatgaccatatgaaatctgattagacatcttagtatttttacattgttagtatattgtaattaatttcta |
135 |
Q |
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||||| |||||| | ||||||||||||||||| ||||||| | ||||||||| |||||| |||||||||||| ||||||||||| ||||||||||| |
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| T |
48299503 |
aagtgcttaaaattcaatattaggacatgatactaccatattatatctgattaaacatctctgtatttttacatagttagtatattacaattaatttctg |
48299404 |
T |
|
| Q |
136 |
atgt-aaatataattctactaaccgtgatatgttctgacttgtagaacaagttaagggaccaggctgttttttacactctttgtgatgattcgaggatgg |
234 |
Q |
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|||| ||||||||||||||||||| |||||||| | |||| ||| ||||||||||||| | |||||||||||| ||||||||||||||| ||| ||| |
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| T |
48299403 |
atgttaaatataattctactaaccatgatatgtacctacttataggacaagttaagggaacgcgctgttttttacgctctttgtgatgattggagattgg |
48299304 |
T |
|
| Q |
235 |
cttatggaaaatgggaatttgatccaatgaagataaagaatccactccctcacaaaagaaggccatttcatatttggcaaggataagaagataag |
329 |
Q |
| |
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||| |||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||| |
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| T |
48299303 |
cttttggaaaatgggaatttgatccagtgaagataaggaatccattccctcacaaaagaagttcatttcatatttggcaaggatatgaagataag |
48299209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 327 - 428
Target Start/End: Complemental strand, 48299188 - 48299087
Alignment:
| Q |
327 |
aagatttgtttcatggaagctgccttggatacaagatcatgaagttccagattgtggccatttgattttatgctataagagcatgtgtgaggcaattttg |
426 |
Q |
| |
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|||||||||||||||| |||| |||||||||||| |||||||||||||| || |||||||| ||||||||||||||||| |||||||||||||||| ||| |
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| T |
48299188 |
aagatttgtttcatggcagctaccttggatacaatatcatgaagttccaaatagtggccatctgattttatgctataagggcatgtgtgaggcaatattg |
48299089 |
T |
|
| Q |
427 |
ag |
428 |
Q |
| |
|
|| |
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|
| T |
48299088 |
ag |
48299087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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