View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_high_62 (Length: 235)
Name: NF19836_high_62
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_high_62 |
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| [»] chr5 (4 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 3e-66; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 39 - 235
Target Start/End: Original strand, 925580 - 925786
Alignment:
| Q |
39 |
atctaaatcaatatcttaattacttgataggagattgtacgatgatatatctgaatcatggttcaattagattgtatcggacaaccaataaatt------ |
132 |
Q |
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| T |
925580 |
atctaaatcaataccttaattacttgataggagattgtacgatgatatatctggatcatggttcaattagattgaatcggacaaccaataaattaataaa |
925679 |
T |
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| Q |
133 |
----aatnnnnnnnnttaaatgataaatgcaaagtgtcctctaattttgttacatatatttaatcatagttgaagatcagtagaaagaagactgaacatg |
228 |
Q |
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| T |
925680 |
ataaaataaaaaaaattaaatgataaatgcaaagtgtcctttaattttgttacatatatttaatcatagttgaatatcagtagaaagaagactgaacatg |
925779 |
T |
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| Q |
229 |
atcatat |
235 |
Q |
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||||||| |
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| T |
925780 |
atcatat |
925786 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 935203 - 935248
Alignment:
| Q |
190 |
aatcatagttgaagatcagtagaaagaagactgaacatgatcatat |
235 |
Q |
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| T |
935203 |
aatcatagttgaagatcagtaaaaagaagactgaacatgatcatat |
935248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 928073 - 928118
Alignment:
| Q |
190 |
aatcatagttgaagatcagtagaaagaagactgaacatgatcatat |
235 |
Q |
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| T |
928073 |
aatcatagttggagatcattagaaagaacactaaacatgatcatat |
928118 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 235
Target Start/End: Original strand, 938992 - 939037
Alignment:
| Q |
190 |
aatcatagttgaagatcagtagaaagaagactgaacatgatcatat |
235 |
Q |
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| T |
938992 |
aatcatagttggagatcagtagaaagaacactgaaaataatcatat |
939037 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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