View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_high_7 (Length: 553)
Name: NF19836_high_7
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_high_7 |
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Alignment Details
Target: chr1 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 151 - 541
Target Start/End: Complemental strand, 10682164 - 10681777
Alignment:
| Q |
151 |
attgtgtcttgcagcaacaagatcccatatatccacacttagccaacactcattaatatgttcttatgttggttttgaattaatatctctccttcaaata |
250 |
Q |
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| T |
10682164 |
attgtgtcttgcagcaacaagatcccatatatc-acacttagccaacactcattaatatgttcttatgttggttttgaattaatatctctccttcaaata |
10682066 |
T |
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| Q |
251 |
actacctaagaaattgttaacaccagcgttggaaattccaaagcaatcatcatattttaattaatcacaccacatatatatggactgttaaaaatagaga |
350 |
Q |
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| T |
10682065 |
actacctaagaaattgttaacaccagcgttggaaattccaaagcaatcatcatattttaattaatcacaccacatatatatggactgttaaaaatagaga |
10681966 |
T |
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| Q |
351 |
aacatcacttttacaaacacaccaatcacattactatcaacatcatatatatataaattaaaattcatcctatgtatcattttcagttttggtattagac |
450 |
Q |
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| T |
10681965 |
aacatcacttttacaaacacaccaatcacattactatcaacacc--atatatataaattaaaattcatcctatgtatcattttcagttttggtattagac |
10681868 |
T |
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| Q |
451 |
cctgtcaccaatgaaacaccattttcttcatcaacctttgactcaatattagtatctagtttctcctcctcctccttttgtacctttgcta |
541 |
Q |
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| T |
10681867 |
cctgtcaataatgaaacaccattttcttcatccatctttgacacaatgttagtatctagtttctccttctcctccttttgtacctttgcta |
10681777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 16 - 108
Target Start/End: Complemental strand, 10682275 - 10682183
Alignment:
| Q |
16 |
caaactccaccttgatgatggttcttttattttgtgtttatgttagagcctctaaatagcaaccgattcaagcttctaaagaataccaatgca |
108 |
Q |
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| T |
10682275 |
caaactccaccttgatgatggttcttttattttgtgtttatgttagagcctctaaatagcaaccgattgaagcttctaaagaataccaatgca |
10682183 |
T |
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