View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19836_high_9 (Length: 519)
Name: NF19836_high_9
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_high_9 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 437; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 35 - 503
Target Start/End: Complemental strand, 14560142 - 14559674
Alignment:
| Q |
35 |
ctctaaaaccaaaagtgaatcccacctcaacatttaagaaattccaatcaattaaactcctttcatgataataacgtatttcatatgtttgttgtgacaa |
134 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |
|
|
| T |
14560142 |
ctctaaaaccaaaagtgaatcccacctcaacacttaagaaatttcaatcaattaaactcctttcatgataataacgtgtttcatatgcttgttgtgacaa |
14560043 |
T |
|
| Q |
135 |
gcttttccctccttcaccaccacagttttgtatcagtggaggtccacacagctcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgtt |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14560042 |
gcttttccctccttcaccaccacagttttgtgtcagtggaggtccacacaactcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgtt |
14559943 |
T |
|
| Q |
235 |
ccagtttgtatttttcccaccaagtgattacaagagaggttcataactgaaagaaatgataaccttgcaagctctaaaggaatctcatctcttaagttgt |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14559942 |
ccagtttgtatttttcccaccaagtgattacaagagaggttcataactgaaagaaatgataaccttgcaagctctaaaggaatctcatctcttaagttgt |
14559843 |
T |
|
| Q |
335 |
tattagacatgtccaatgactccagatgttttagatttcctaaagaagaaggaatgctacctgagaaagcattttgtgacaagttaagagcatggagtgc |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14559842 |
tattagacatgtccaatgactccagatgttttagatttcctaaagaataaggaatgctatctgagaaagcattttgtgacaagttaagagcatggagtgc |
14559743 |
T |
|
| Q |
435 |
tgtgagactcataagctccattggtattggcccatcaaatttgttggatgagaaatccaatgaagtaaa |
503 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14559742 |
tgtgagactcataagctccattggtattggcccatcaaatttgttggatgagaaatccaatgaagtaaa |
14559674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 47 - 287
Target Start/End: Complemental strand, 14569885 - 14569645
Alignment:
| Q |
47 |
aagtgaatcccacctcaacatttaagaaattccaatcaattaaactcctttcatgataataacgtatttcatatgtttgttgtgacaagcttttccctcc |
146 |
Q |
| |
|
|||||||| ||| ||||||| ||||||||||| |||||||| ||| ||| || ||| ||||| || ||||||||| ||||||| |||||||||||||||| |
|
|
| T |
14569885 |
aagtgaattccaactcaacacttaagaaattctaatcaattgaacccctgtcgtgaaaataaggtgtttcatatgcttgttgttacaagcttttccctcc |
14569786 |
T |
|
| Q |
147 |
ttcaccaccacagttttgtatcagtggaggtccacacagctcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgttccagtttgtatt |
246 |
Q |
| |
|
||||||| |||| |||||| |||||||||||||||||| ||||| ||| ||||||| |||||||||||||||||||| ||| |||||||||| | ||||| |
|
|
| T |
14569785 |
ttcaccaacacaattttgtgtcagtggaggtccacacaactctttattacctataagtgaatcttcttgaaatgattgaatttgtgttccaggtggtatt |
14569686 |
T |
|
| Q |
247 |
tttcccaccaagtgattacaagagaggttcataactgaaag |
287 |
Q |
| |
|
||||||||||| ||| |||||||||||||| |||||||||| |
|
|
| T |
14569685 |
tttcccaccaaatgagtacaagagaggttcgtaactgaaag |
14569645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 172 - 500
Target Start/End: Complemental strand, 32549371 - 32549043
Alignment:
| Q |
172 |
ggaggtccacacagctcttcattgcctataaatgaatcttcttgaaatgattaaatgtgtgttccagtttgtatttttcccaccaagtgattacaagaga |
271 |
Q |
| |
|
||||||||| | ||| |||||||||| |||||||||||| |||||||||||| ||| ||||| |||||| ||||| ||||||||||||| ||| | || | |
|
|
| T |
32549371 |
ggaggtccaaatagcccttcattgccaataaatgaatctgcttgaaatgattgaatctgtgtcccagttggtattcttcccaccaagtggttatatgaaa |
32549272 |
T |
|
| Q |
272 |
ggttcataactgaaagaaatgataaccttgcaagctctaaaggaatctcatctcttaagttgttattagacatgtccaatgactccagatgttttagatt |
371 |
Q |
| |
|
||||||| |||| |||||||||||| |||||||||||| ||||||||| | |||||| || | |||| || || ||||| |||| | ||||| |
|
|
| T |
32549271 |
ggttcatgactgcaagaaatgataaacttgcaagctctgtaggaatctctccacttaaggaattcatggacaaatctaaggactcgagatatcggagatt |
32549172 |
T |
|
| Q |
372 |
tcctaaagaagaaggaatgctacctgagaaagcattttgtgacaagttaagagcatggagtgctgtgagactcataagctccattggtattggcccatca |
471 |
Q |
| |
|
| |||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||| || |||||||||| || ||| |
|
|
| T |
32549171 |
gcttaaagaagaaggtatcttacctgagaaagcattttgtgacaagttaagagcatgaagtgctgaaagattcataagttcttttggtattggtccttca |
32549072 |
T |
|
| Q |
472 |
aatttgttggatgagaaatccaatgaagt |
500 |
Q |
| |
|
|| ||||||||||||||||||| |||||| |
|
|
| T |
32549071 |
aagttgttggatgagaaatccagtgaagt |
32549043 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 328 - 503
Target Start/End: Complemental strand, 14569647 - 14569462
Alignment:
| Q |
328 |
aagttgttattagacatgtccaatgactccagatgttttagatttcctaaagaagaaggaatgctacctgag-aaagcattttgtgacaag-------tt |
419 |
Q |
| |
|
|||| |||||||||| |||||||||||| ||||||||||||| |||||||||||| ||| ||||||||| |||||||| ||||||||| || |
|
|
| T |
14569647 |
aagtagttattagaccagtccaatgactcaagatgttttagatatcctaaagaaga---aatactacctgagaaaagcattgtgtgacaagttaagactt |
14569551 |
T |
|
| Q |
420 |
aagagcatggagtgctgtgagactcataagctccattggtattggcccatcaaatttg-----ttggatgagaaatccaatgaagtaaa |
503 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||||||| ||||| | | ||||||||||||||||| |||||||| |
|
|
| T |
14569550 |
aagagcatggagtgctgtgagactcataagctcctttgttattggccattcaaagtggttggattggatgagaaatccaaggaagtaaa |
14569462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 32549498 - 32549451
Alignment:
| Q |
39 |
aaaaccaaaagtgaatcccacctcaacatttaagaaattccaatcaat |
86 |
Q |
| |
|
|||||||||||||||||||| |||| || | ||||||||||||||||| |
|
|
| T |
32549498 |
aaaaccaaaagtgaatcccaactcagcactcaagaaattccaatcaat |
32549451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University