View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_low_13 (Length: 475)
Name: NF19836_low_13
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_low_13 |
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| [»] chr1 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 22 - 475
Target Start/End: Complemental strand, 46166016 - 46165563
Alignment:
| Q |
22 |
tcaatcttgcttttgattattgtgtacacgtattcgttgatcactcttaggnnnnnnnnaagtactgcttccgatccaatgttcaggaacctctgaacct |
121 |
Q |
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| T |
46166016 |
tcaatcttgcttctgattactgtgtacacgtattcgtcgattactcttaggttttttttaagtactgcttccgatcccatgttcaggaaccgctgaacct |
46165917 |
T |
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| Q |
122 |
tccagcgaaagttaacataccgaaacataatagtagcactagcttcatcaaaagcattggaaaattgtgtgccttctctataggttccacacattgtgtc |
221 |
Q |
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| T |
46165916 |
tccagagaaagttaacataccgaaacataatagcagcactagcttcatcaaaagcattggaaaattgtgtgccttctctataggttccacacattgtgtc |
46165817 |
T |
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| Q |
222 |
caattctacaccaaggataactttgaatacagaatctagagttgatttcatgaataggtcctgccaataagcaagatatgcagattagaccaagattgtt |
321 |
Q |
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| T |
46165816 |
caattctacaccaaggataactttgaatacagaatctagagttgatttcatgaataggtcctgccaataagcaagatatgcagattagaccaagattgtt |
46165717 |
T |
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| Q |
322 |
actacctctgtccctgagtatatgatcttgttgactaaatcataaatattaagagcaagggaaaatttcaagaggttctatagttagggacggaggtagt |
421 |
Q |
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| T |
46165716 |
actacctctgtccctaagtatatgatcttgttgactaaatcacaaaaattaagagcaagggaaaatttcaagaggttctatagttagggacggaggtagt |
46165617 |
T |
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| Q |
422 |
attacgaagatcataagaattttttgtatttcaaaccaagcaaaattttacctg |
475 |
Q |
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| T |
46165616 |
attacgaagatcataagaattttttgtatttcaaaccaagcaaaattttacctg |
46165563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 19 - 295
Target Start/End: Complemental strand, 46158942 - 46158666
Alignment:
| Q |
19 |
tgttcaatcttgcttttgattattgtgtacacgtattcgttgatcactcttaggnnnnnnnnaagtactgcttccgatccaatgttcaggaacctctgaa |
118 |
Q |
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| T |
46158942 |
tgttcaatcttgcttttgattattgtgtacacgtattcgttgatcactcttaggttttttttaagtaccgcttccgatccaatgttcaggaacctctgaa |
46158843 |
T |
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| Q |
119 |
ccttccagcgaaagttaacataccgaaacataatagtagcactagcttcatcaaaagcattggaaaattgtgtgccttctctataggttccacacattgt |
218 |
Q |
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| T |
46158842 |
ccttccagagaaagttaacataccaaaacataatagtagcactagcttcattaaaagcattggaaaattgtgtgccttctttagaggttccacacattgt |
46158743 |
T |
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| Q |
219 |
gtccaattctacaccaaggataactttgaatacagaatctagagttgatttcatgaataggtcctgccaataagcaa |
295 |
Q |
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| T |
46158742 |
gtccagctctacaccaaggataactttgaatacagaatctagagttgatttcatgaataggtcctgccaataagcaa |
46158666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 400 - 475
Target Start/End: Complemental strand, 46158626 - 46158551
Alignment:
| Q |
400 |
tatagttagggacggaggtagtattacgaagatcataagaattttttgtatttcaaaccaagcaaaattttacctg |
475 |
Q |
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| T |
46158626 |
tatagttagggacggaagtagtattacgaagatcataagaattttctgtaattcaaactaaacaacattttacctg |
46158551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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