View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_low_15 (Length: 435)
Name: NF19836_low_15
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 100; Significance: 3e-49; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 147 - 258
Target Start/End: Complemental strand, 7431822 - 7431711
Alignment:
| Q |
147 |
aatgattcaaatatgataaaactaactttgaagagcttacatcatatagtgatggctgcagcatttcttgactcctgttacctttgtgtttggctaacat |
246 |
Q |
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| T |
7431822 |
aatgatgcaaatatgataaaactaactttgaagaggttacatcatatagtgatggctgcagcatttcttgactcctgttaccttggtgtttggctaacat |
7431723 |
T |
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| Q |
247 |
agaagtagtggt |
258 |
Q |
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| T |
7431722 |
agaagtagtggt |
7431711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 372 - 426
Target Start/End: Complemental strand, 7431570 - 7431516
Alignment:
| Q |
372 |
aaatttcattctaatgtgaagcttggtgatattgtttgtggtgccctatgcttct |
426 |
Q |
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| T |
7431570 |
aaatttcattctaatgtgaagcttggtgatattgtttgtggtgctctatacttct |
7431516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 333 - 375
Target Start/End: Complemental strand, 7431639 - 7431597
Alignment:
| Q |
333 |
gttggatagaaataactaatatatctgctatgcagtagtaaat |
375 |
Q |
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| T |
7431639 |
gttggatagaaataactaatatatcttctatgcagtagtaaat |
7431597 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 15837395 - 15837439
Alignment:
| Q |
214 |
ttgactcctgttacctttgtgtttggctaacatagaagtagtggt |
258 |
Q |
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| T |
15837395 |
ttgactgctgttaccttggtgtttggctaacttagaagtattggt |
15837439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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