View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_low_16 (Length: 432)
Name: NF19836_low_16
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 416
Target Start/End: Complemental strand, 10127816 - 10127433
Alignment:
| Q |
19 |
cattttgcaaacagataatttgtaaattgaagttcttattcttaaactagtcattaaggtctactacagattatttttgtggtactttccatgaatagac |
118 |
Q |
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| T |
10127816 |
cattttgcaaacagataatttgtaaattgaagttcttattcttaaactagtcattaaggtctactacagattatttttgt--------------atagac |
10127731 |
T |
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| Q |
119 |
tatgtagcatgtgttgaccactgacaaggagtcattgatttcagcnnnnnnnactcatttcaaattttgatttccgttttagtaacacacagtaagtcat |
218 |
Q |
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| T |
10127730 |
tatgtagcatgtgttgaacaccgacaaggagtcattgatttcagctttttttactcatttcaaattttgatttccgttttagtaacacacagtaagtcat |
10127631 |
T |
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| Q |
219 |
ataatataacgagatcaaacagcatctagtcctttcattctgaaagattttcacaatatcaatcacatagttcgtcatgaatttccaatctcatcccaaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10127630 |
ataatataacgagatcaaacagcatctagtcctttcattctgaaagattttcacaatatcaatcacatagttcgtcatgaatttccaatctcatcccaaa |
10127531 |
T |
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| Q |
319 |
cagaagttgatgtgcatcttcaataggtaacaaacaaaagctgaggaaatacatgaacaaaagagatgcggaattgactgaaattaacatttgatcga |
416 |
Q |
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||||||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10127530 |
cagaagttgctgtgcatcttcaataggtaacaaacaaaagctaaggaaatacgtgaacaaaagagatgcggaattgactgaaattaacatttgatcga |
10127433 |
T |
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