View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_low_19 (Length: 399)
Name: NF19836_low_19
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_low_19 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 84 - 382
Target Start/End: Complemental strand, 13630548 - 13630250
Alignment:
| Q |
84 |
taatatatatagatggaaagagataggggagagagaaagtataccaactccattagtcttatcattgttcccaagtgtaccatttgtttcattgtgtcct |
183 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13630548 |
taatatatatagatggaaagagacaggggagagagaaagtataccaactccattagtcttatcattgttcccaagtgtaccatttgtttcattgtgtcct |
13630449 |
T |
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| Q |
184 |
accacagattctttttgagtcttaatactctctttgggtgtccctttctctatgtcttgaaccacatcactctcaggtgttacttcagttaatttactct |
283 |
Q |
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||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13630448 |
accacagattctttttgagccttattactctctttgggtgtccctttctctatgtcttgaaccacatcactctcaggtgttacttcagttaatttactct |
13630349 |
T |
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| Q |
284 |
tatcattttcagctgctttgatattcatccttttgatagtatcttcctcagctacaaaggaagttgtaatactaacaagaggaaatatggtgatctttg |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13630348 |
tatcattttcagctgctttgatattcatccttttgatagtatcttcctcagctacaaaggaagttgtaatactaacaagaggaaatatggtgatctttg |
13630250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 84 - 382
Target Start/End: Complemental strand, 13730960 - 13730662
Alignment:
| Q |
84 |
taatatatatagatggaaagagataggggagagagaaagtataccaactccattagtcttatcattgttcccaagtgtaccatttgtttcattgtgtcct |
183 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13730960 |
taatatatatagatggaaagagacaggggagagagaaagtataccaactccattagtcttatcattgttcccaagtgtaccatttgtttcattgtgtcct |
13730861 |
T |
|
| Q |
184 |
accacagattctttttgagtcttaatactctctttgggtgtccctttctctatgtcttgaaccacatcactctcaggtgttacttcagttaatttactct |
283 |
Q |
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| T |
13730860 |
accacagattctttttgagccttattactctctttgggtgtccctttctctatgtcttgaaccacatcactctcaggtgttacttcagttaatttactct |
13730761 |
T |
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| Q |
284 |
tatcattttcagctgctttgatattcatccttttgatagtatcttcctcagctacaaaggaagttgtaatactaacaagaggaaatatggtgatctttg |
382 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13730760 |
tatcattttcagctgctttgatattcatccttttgatagtatcttcctcagctacaaaggaagttgtaatactaacaagaggaaatatggtgatctttg |
13730662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 297 - 374
Target Start/End: Complemental strand, 13748567 - 13748490
Alignment:
| Q |
297 |
tgctttgatattcatccttttgatagtatcttcctcagctacaaaggaagttgtaatactaacaagaggaaatatggt |
374 |
Q |
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||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13748567 |
tgctttgatattcattctttcaatagtatcttcctcagctacaaaggaagttgtaatactaacaagaggaaatatggt |
13748490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 374
Target Start/End: Complemental strand, 9276671 - 9276586
Alignment:
| Q |
289 |
ttttcagctgctttgatattcatccttttgatagtatcttcctcagctacaaaggaagttgtaatactaacaagaggaaatatggt |
374 |
Q |
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||||| ||||||||| |||| || || | ||||||||||| |||||||||||||||||||||||||| || | |||||| ||||| |
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| T |
9276671 |
ttttctgctgctttggtattgattctatccatagtatcttcttcagctacaaaggaagttgtaatactgaccaaaggaaaaatggt |
9276586 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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