View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19836_low_22 (Length: 380)
Name: NF19836_low_22
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_low_22 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 91 - 361
Target Start/End: Original strand, 11067668 - 11067941
Alignment:
| Q |
91 |
tacgatctttgatatatcggtttatattttaactatgtgttttgaatccatttcttgaattaaattacaagaaaggctgaatttttcttttagtatttta |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11067668 |
tacgatctttgatatatcggtttatattttaactatgtgttttgaatccatttcttgagttaaattacaagaaaggctgaatttttcttttagtatttta |
11067767 |
T |
|
| Q |
191 |
ccatgtattcaaactcaaaatacttcttttacaatagcacttcactacaaatttttatctaaactaacatagattttacagtgaata-tttgtttataaa |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
11067768 |
ccatgtattcaaactcaaaatacttcttttacaatagcacttcactacaaatttttatctaaactaacatagattttacagtgaatattttgtttataaa |
11067867 |
T |
|
| Q |
290 |
actacaaattagttgatgagt--nnnnnnnnctactaatagttgttacatattcactgcaaaaagaattcaact |
361 |
Q |
| |
|
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11067868 |
actacaaattagttgatgagtacaaaaaaaactactgatagttgttacatattcactgcaaaaagaattcaact |
11067941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 2 - 98
Target Start/End: Original strand, 11066811 - 11066907
Alignment:
| Q |
2 |
ggatcagaatctggcagcatgtatacaaatacaatgagagagatggattggatgcagtcacgcactcatgttgttgtgaatctagaccgtacgatct |
98 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
11066811 |
ggatcagaatctggcagcatgtatacaaatacaatgagagagatggattggatgcagtcacgcattcatgttgttgtgaatctagaccgtacgatct |
11066907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 173 - 240
Target Start/End: Original strand, 30783026 - 30783093
Alignment:
| Q |
173 |
ttttcttttagtattttaccatgtattcaaactcaaaatacttcttttacaatagcacttcactacaa |
240 |
Q |
| |
|
|||| ||||| |||||||||||||| |||||||||||||| || |||||||||||||| ||||||| |
|
|
| T |
30783026 |
ttttattttaatattttaccatgtactcaaactcaaaatatgactcttacaatagcactttactacaa |
30783093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University