View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_low_23 (Length: 379)
Name: NF19836_low_23
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 29662538 - 29662176
Alignment:
| Q |
1 |
cagtagatgctaataagtaaacacacaaagagcaatattgattttgattgtaggaaaactaatgtcaccacagtcaatattttactgggaaatcatggag |
100 |
Q |
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| T |
29662538 |
cagtagatgctaataagtaaacacacaaagagcaatattgattttgattgtaggaaaactaatgtcaccacagtcaatattttactgggaaatcatggag |
29662439 |
T |
|
| Q |
101 |
ttacgaatgcaggaattacccgatgcgcatttcaatttttnnnnnnncatattgagcattagctattatcgatataggattaattcgcataactataaaa |
200 |
Q |
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| T |
29662438 |
ttacgaatgcaggaattacccaatgcgcatttcaatttttaaaaaaacatattgagcattagctattatcgatataggattaattcgcataactataaaa |
29662339 |
T |
|
| Q |
201 |
tgaattgattacttaggatttagatggacaatgtctacattcttggttcatcgattgaattggccaattaagttaacatatttgcacctaaagcaagtta |
300 |
Q |
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| T |
29662338 |
tgaattgattacttaggatttagatggacaatgtctacattcttggatcatcgattgaattggccaattaagttaacatatttgcacctaaagcaagtta |
29662239 |
T |
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| Q |
301 |
tgactgtgtgacagcacaatagtgagtaataaaaccttgaaggtgatgatgccaacattctaa |
363 |
Q |
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| T |
29662238 |
tgactgtgtgacagcacaatagtgagtaataaaaccttgaaggtgatgatgccaacattctaa |
29662176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 160 - 362
Target Start/End: Original strand, 33183432 - 33183633
Alignment:
| Q |
160 |
tagctattatcgatataggattaattcgcataactataaaatgaattgattacttaggatttagatggacaatgtctacattcttggttcatcgattgaa |
259 |
Q |
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| T |
33183432 |
tagctattatcgatataggattaattcgcataac--tagaacgaattgactacttaggatttagatggacaacatctatattcttgggccaacaatcgaa |
33183529 |
T |
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| Q |
260 |
ttggccaattaagt----taacatatttgcacctaaagcaagttatgactgtgtgacagcacaatagtgagtaa-taaaaccttgaaggtgatgatgcca |
354 |
Q |
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||| | || ||||| |||||| ||||||||||||||| | |||||||||| ||| |||||||||||||| |||||| |||||||||||||||||| |
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| T |
33183530 |
ttgacgaa-taagttaactaacatctttgcacctaaagcatgctatgactgtg---cagtacaatagtgagtaactaaaacattgaaggtgatgatgcca |
33183625 |
T |
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| Q |
355 |
acattcta |
362 |
Q |
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|||||||| |
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| T |
33183626 |
acattcta |
33183633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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