View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_low_27 (Length: 367)
Name: NF19836_low_27
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_low_27 |
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Alignment Details
Target: chr5 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 136 - 354
Target Start/End: Original strand, 655817 - 656035
Alignment:
| Q |
136 |
ctatggacttgtacaaatccagttcttacaattgtttctacannnnnnnataacagttgtagaaagtgaaatttattttatgttaattacaattagagta |
235 |
Q |
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| T |
655817 |
ctatggacttgtacaaatccagttcttacaattgtttctacttttttttataacagttgtagaaagtgaaatttattttacgttaattacaattagagta |
655916 |
T |
|
| Q |
236 |
atggtttaccatattcgttaccttgaaaatcattgcaatatttatgatatacatatattttaaagatttaaagcttgttcaatgataaacttgatgtagc |
335 |
Q |
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| T |
655917 |
atggtttaccatattcgttaccttgaaaatcattgcaatatttatgatatacatatattttaaagatttaaagcttgttcaatgataaacttgatgtagc |
656016 |
T |
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| Q |
336 |
ctcatgtcaattgttgttc |
354 |
Q |
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| T |
656017 |
atcatgtcaattgttgttc |
656035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 95
Target Start/End: Original strand, 655725 - 655803
Alignment:
| Q |
17 |
atattatgtgtgtgaaaatttgtacctcagcaaaggatatcattggagtctggtggacaaatttgttattttgatttca |
95 |
Q |
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| T |
655725 |
atattatgtgtgtgaaaatttgtacctcagcaaaggatatcattggagcctggtggacaaatttgttattttgatttca |
655803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 136 - 176
Target Start/End: Original strand, 2694448 - 2694488
Alignment:
| Q |
136 |
ctatggacttgtacaaatccagttcttacaattgtttctac |
176 |
Q |
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| T |
2694448 |
ctatggacttgtacaaatccagtatgtacaattgtttctac |
2694488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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