View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_low_3 (Length: 670)
Name: NF19836_low_3
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 453; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 126 - 655
Target Start/End: Original strand, 36262008 - 36262554
Alignment:
| Q |
126 |
gtacctaactgtctgcctataaattggagtcgtttatttcaggttgaggaggcaagacataacacagcgtattgtgttgtttgtttctaaat-------- |
217 |
Q |
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| T |
36262008 |
gtacctaactgtctgcctataaattggagtcgtttatttgaggttgaggaggcaagacataacacagcgtattgtgttgtttgtttctaaatttctaaat |
36262107 |
T |
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| Q |
218 |
agtttccttgttctctatcacttatggctaatgataattcagcaagaattgaaacccatgaggttgttttagatacaaacaaggattcctcagatacatg |
317 |
Q |
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| T |
36262108 |
agtttccttgttctctatcacttatggctaatgataattcagcaagaattgaaacccatgaggttgttttagatacaaacaaggattcctcagatacatg |
36262207 |
T |
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| Q |
318 |
taaaggctctggctcctttgtctctgtccctttcttgcaaaaggtgtctcctaatctttcctttacaaactcatcatacgtacacatatagttacata-- |
415 |
Q |
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| T |
36262208 |
taaaggctctggctcctttgtctctgtccctttcttgcaaaaggtgtctcctaatctttcctttacaaactcatcatacgtacacatatagttacatata |
36262307 |
T |
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| Q |
416 |
------gtttc-tttctgaactaatataagattttgatcatatagtatatattgaattaattaggttttgtttggtggtgattacagttaatagcagaaa |
508 |
Q |
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| T |
36262308 |
tagtttgttacgtttctgaactaatataagattttgatcatatagtatatattgaattaattaggttttgtttgttggtgaatacagttaatagcagaaa |
36262407 |
T |
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| Q |
509 |
tggtgggcacatatttcttgatatttgcaggatgtgcatcaatagtagtgaacaaggacaacgacaacgtggtaacacttcctgggattgcaattgtttg |
608 |
Q |
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| T |
36262408 |
tggtgggcacatatttcttaatatttgcaggatgtgcatcaatagtagtgaacaaggacaacgacaacgtagtaacacttccagggattgcaattgtttg |
36262507 |
T |
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| Q |
609 |
gggactaactttgttggtattgatttactctcttggtcatatctctg |
655 |
Q |
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| T |
36262508 |
gggactaactttgttggtattgatttactctcttggtcatatctctg |
36262554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 514 - 655
Target Start/End: Original strand, 36267574 - 36267715
Alignment:
| Q |
514 |
ggcacatatttcttgatatttgcaggatgtgcatcaatagtagtgaacaaggacaacgacaacgtggtaacacttcctgggattgcaattgtttggggac |
613 |
Q |
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| T |
36267574 |
ggcacatatttcttgatatttgccggttgtgcttcggtgttggtgaacaagaacaatgaaaatgttgtaacacttcctggaatttcaattgtttggggac |
36267673 |
T |
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| Q |
614 |
taactttgttggtattgatttactctcttggtcatatctctg |
655 |
Q |
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| T |
36267674 |
ttgctgtgatggtgctggtttactctcttggtcacatctctg |
36267715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 53
Target Start/End: Original strand, 36261901 - 36261934
Alignment:
| Q |
20 |
gataacgcatgacctaaatagttgtttgtcgaat |
53 |
Q |
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| T |
36261901 |
gataacgcatgacctaaatagttgtttgtcgaat |
36261934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 565 - 655
Target Start/End: Original strand, 5388630 - 5388720
Alignment:
| Q |
565 |
gacaacgacaacgtggtaacacttcctgggattgcaattgtttggggactaactttgttggtattgatttactctcttggtcatatctctg |
655 |
Q |
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| T |
5388630 |
gacaatgacaaagtagtaacacatcctgggatctcaattgtttggggcctcactgttatggttttggtttactctgttggtcacatctctg |
5388720 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 565 - 655
Target Start/End: Original strand, 5402439 - 5402529
Alignment:
| Q |
565 |
gacaacgacaacgtggtaacacttcctgggattgcaattgtttggggactaactttgttggtattgatttactctcttggtcatatctctg |
655 |
Q |
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| T |
5402439 |
gacaatgacaaagtagtaacacatcctgggatctcaattgtttggggcctcactgttatggttttggtttactctgttggtcacatctctg |
5402529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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