View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_low_34 (Length: 335)
Name: NF19836_low_34
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_low_34 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 35130231 - 35129898
Alignment:
| Q |
1 |
ttctcctcaaccgtcactgtccttggattcaaaagttgcatagccgacaattctctcttcgccaaaggttctaatgattcattcgttattacagttgttt |
100 |
Q |
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| T |
35130231 |
ttctcctcaaccgtcactgtccttggattcaaaagttgcatagccgacaattctctcttcgccaaaggttctaatgattcattcgttattatagttgttt |
35130132 |
T |
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| Q |
101 |
atgtagatgacataatcttggatggagccaatcaagctttgccacatcaaacacacaactaaagttggaaaaacagttaaagctgaaagttattggaaac |
200 |
Q |
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| T |
35130131 |
atgtagatgacataatcttggatggagccaatcaagctttgccacatcaaacacacaactaaagttggaaaaacagttaaagctgaaagttattggaaac |
35130032 |
T |
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| Q |
201 |
atgaagtatttccttggactggaaaagtggaaatagccaagtcatccaagggattccacatgtataagaaaatagaccttgcagctccttgaagatatag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35130031 |
atgaagtatttccttggactggaaaagtggaaatagccaagtcatccaagggattccacatgtataagaaaatagaccttgcagctccttgaagatatag |
35129932 |
T |
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| Q |
301 |
tatttttagtagcataacctctacccatccctatg |
335 |
Q |
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|||||||||||||| |||||||||||||||||||| |
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| T |
35129931 |
tatttttagtagca-aacctctacccatccctatg |
35129898 |
T |
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