View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_low_36 (Length: 320)
Name: NF19836_low_36
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_low_36 |
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| [»] chr8 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 31789932 - 31789613
Alignment:
| Q |
1 |
cctacatcaacaatgagctgaattcttaccaacctgacaaatttacattggcagttccttcataagtttaaatcaagatggaaaattgaattttatattg |
100 |
Q |
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|||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31789932 |
cctacatcgacaatgagctgaattcttaccaacctgacaaacttacattggcagttccttcataagtttaaatcaagatggaaaattgaattttatattg |
31789833 |
T |
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| Q |
101 |
gtttaaaccgttgagtatttaaataatagtccaagattgactgatgaaaatgttatctctatctgaaaaatctgaaaactatggaagatagaaacttgtg |
200 |
Q |
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| T |
31789832 |
gtttaaaccgttgagtatttaaataatagtccaagattgactgatgaaaatgttatctctatctgaaaaatctgaaaactatggaagatagaaatttgtg |
31789733 |
T |
|
| Q |
201 |
gagcctcatacctttgaaagagtaaaaatgaaaatgagtagtatactccatgtaatgtaagtatctctttgtttggaatttaggaaaggttccaataaaa |
300 |
Q |
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| T |
31789732 |
gagcttcataactttgaaagagtaaaaatgaaaatgagtagtatactctatgtaatgtaagtatctctttgtttggaatttaggaaaggttccaataaaa |
31789633 |
T |
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| Q |
301 |
tcaatccaaggagatgtcat |
320 |
Q |
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| T |
31789632 |
tcaatccaaggagatgtcat |
31789613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 31784964 - 31784662
Alignment:
| Q |
1 |
cctacatcaacaatgagctgaattcttaccaacctgacaaatttacattggcagttccttcataagtttaaatcaagatggaaaattgaattttatattg |
100 |
Q |
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|||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
31784964 |
cctacatcgacaatgagctgaattcttaccaaccagacaaatttacattggcagttcctttataagtttaaatcaagatggaaaaatgaattttatattg |
31784865 |
T |
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| Q |
101 |
gtttaaaccgttgagtatttaaataatagtccaagattgactgatgaaaatgttatctctatctgaaaaatctgaaaactatggaagatagaaacttgtg |
200 |
Q |
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| T |
31784864 |
gttttaactgttgagtatttaaataatagtccaagattgaccggtgaaaatgttatctctatctg---------aaaactatggaagatagaaacttgtg |
31784774 |
T |
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| Q |
201 |
gagcctcatacctttgaaagagtaaaaatgaaaatgagtagtatactccatgtaatgtaagtatctctttgtttggaatttaggaaaggttccaataaaa |
300 |
Q |
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|||| | | | |||||||| |||||||||||||||| ||||| ||||| ||| ||||||||| ||||| ||||||||| ||| ||||||||||| |
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| T |
31784773 |
gagcttgacaactttgaaaaagtaaaaatgaaaatg---agtatcttccatataa-gtaagtatc----tgtttcgaatttaggtaagcttccaataaaa |
31784682 |
T |
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| Q |
301 |
tcaatccaaggagatgtcat |
320 |
Q |
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||||||||||| ||||||| |
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| T |
31784681 |
acaatccaaggaaatgtcat |
31784662 |
T |
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