View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19836_low_37 (Length: 316)

Name: NF19836_low_37
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19836_low_37
NF19836_low_37
[»] chr6 (2 HSPs)
chr6 (19-296)||(9627261-9627541)
chr6 (127-163)||(9613385-9613421)
[»] chr3 (2 HSPs)
chr3 (23-88)||(11627830-11627895)
chr3 (19-86)||(34251040-34251109)
[»] chr1 (1 HSPs)
chr1 (52-88)||(41941053-41941089)
[»] chr7 (1 HSPs)
chr7 (44-84)||(673834-673874)
[»] chr8 (1 HSPs)
chr8 (19-50)||(14958007-14958038)
[»] chr2 (2 HSPs)
chr2 (20-50)||(31395288-31395318)
chr2 (19-88)||(38288570-38288646)
[»] chr4 (2 HSPs)
chr4 (19-67)||(23666483-23666531)
chr4 (229-277)||(29769072-29769120)


Alignment Details
Target: chr6 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 9627261 - 9627541
Alignment:
Q  19 aattagggtttcagtgttacaagcaatatatagtact---acgattcagtttacaatattacccctaaaccgtttcttttgtgtcttgcatatatgagca 115  Q
    |||||||||||||||||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9627261 aattagggtttcagtgttacaagcaatatatagtactactacgattcagtttacaatattacccctaaaccgtttcttttgtgtcttgcatatatgagca 9627360  T
Q  116 catactttagcatatgttatagtagtaaattggtgtaacttaagtgactttgattgcatatctggagcaatagatatatttcaatttgcaagacaaagtg 215  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9627361 catacttcagcatatgttatagtagtaaattggtgtaacttaagtgactttgattgcatatctggagcaatagatatatttcaatttgcaagacaaagtg 9627460  T
Q  216 cagtcatcagtcttaaaatttgagttggcttaacttaactctacaaaaccgacttgtaaagtaaaagatgcctcccactta 296  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  9627461 cagtcatcaggcttaaaatttgagttggcttaacttaactctacaaaaccgacttgtaaagtcaaagatgcctcccactta 9627541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 127 - 163
Target Start/End: Original strand, 9613385 - 9613421
Alignment:
Q  127 atatgttatagtagtaaattggtgtaacttaagtgac 163  Q
    |||| |||||||||||||||||| |||||||||||||    
T  9613385 atatattatagtagtaaattggtataacttaagtgac 9613421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 88
Target Start/End: Complemental strand, 11627895 - 11627830
Alignment:
Q  23 agggtttcagtgttacaagcaatatatagtactacgattcagtttacaatattacccctaaaccgt 88  Q
    ||||||| ||||||||||||||||||||||||||| || |||||||||||||||||||| ||||||    
T  11627895 agggttttagtgttacaagcaatatatagtactacaatccagtttacaatattacccctgaaccgt 11627830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 86
Target Start/End: Original strand, 34251040 - 34251109
Alignment:
Q  19 aattagggtttcagtgttacaagca--atatatagtactacgattcagtttacaatattacccctaaacc 86  Q
    |||||||| |||||||||||||||   ||||||||||||||||||||| |||||| | ||||||| ||||    
T  34251040 aattagggcttcagtgttacaagccttatatatagtactacgattcagattacaacaatacccctgaacc 34251109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 52 - 88
Target Start/End: Complemental strand, 41941089 - 41941053
Alignment:
Q  52 tactacgattcagtttacaatattacccctaaaccgt 88  Q
    |||||||||||||||||||||||||||||||||||||    
T  41941089 tactacgattcagtttacaatattacccctaaaccgt 41941053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 84
Target Start/End: Complemental strand, 673874 - 673834
Alignment:
Q  44 atatatagtactacgattcagtttacaatattacccctaaa 84  Q
    |||||||||| ||||||||||||||||||| ||||||||||    
T  673874 atatatagtattacgattcagtttacaataatacccctaaa 673834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 19 - 50
Target Start/End: Complemental strand, 14958038 - 14958007
Alignment:
Q  19 aattagggtttcagtgttacaagcaatatata 50  Q
    ||||||||||||||||||||||||||||||||    
T  14958038 aattagggtttcagtgttacaagcaatatata 14958007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 20 - 50
Target Start/End: Original strand, 31395288 - 31395318
Alignment:
Q  20 attagggtttcagtgttacaagcaatatata 50  Q
    |||||||||||||||||||||||||||||||    
T  31395288 attagggtttcagtgttacaagcaatatata 31395318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 38288570 - 38288646
Alignment:
Q  19 aattagggtttcagtgttacaagcaatatatag-------tactacgattcagtttacaatattacccctaaaccgt 88  Q
    ||||||||||||| ||||| ||||||||||||        |||||||||||  ||||||||||||||||||||||||    
T  38288570 aattagggtttcaatgttataagcaatatatatataatactactacgattctctttacaatattacccctaaaccgt 38288646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 23666483 - 23666531
Alignment:
Q  19 aattagggtttcagtgttacaagcaatatatagtactacgattcagttt 67  Q
    ||||||||||| |||||||| | ||||| |||||||| |||||||||||    
T  23666483 aattagggtttaagtgttacgaccaatacatagtacttcgattcagttt 23666531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 229 - 277
Target Start/End: Original strand, 29769072 - 29769120
Alignment:
Q  229 taaaatttgagttggcttaacttaactctacaaaaccgacttgtaaagt 277  Q
    |||||||| ||||||| ||||||||| |||||||||||  |||||||||    
T  29769072 taaaatttcagttggcataacttaaccctacaaaaccgggttgtaaagt 29769120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University