View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_low_4 (Length: 637)
Name: NF19836_low_4
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 14 - 605
Target Start/End: Original strand, 3542187 - 3542787
Alignment:
| Q |
14 |
cacagataccaaactatctctgacccctcccatacctcaaaagtctcaataccctatccatatcataaaattacnnnnnnnnnnnnaatttcaaaaccat |
113 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3542187 |
cacagataccaaactatctctgacccctcc-atacctcaaaagtctcaataccctatccatatcataaaattacttttttatttttaatttcaaaaccat |
3542285 |
T |
|
| Q |
114 |
atcataaaataaaatttgttacaactatttctcctattttagctcactccactctcctaattttactcctactcaaattctctctcattctattttcttt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3542286 |
atcataaaataaaatttgttacaactatttctcctattttagctcactccactctcctaattttactcctactcaaattctctctcattctattttcttt |
3542385 |
T |
|
| Q |
214 |
ttaataaccatccagcgtcgagtttcagagactcgtcaaaattagaacaatgataaatattcaatgaacaccaattaaactaccgtctaccgataatatt |
313 |
Q |
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||||||||||||||||||| |||||||||||||| |||||||||||||||| ||||||||||||| ||||| || | || ||||||||||| |||||||| |
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| T |
3542386 |
ttaataaccatccagcgtcaagtttcagagactcatcaaaattagaacaatcataaatattcaattaacactaactgaattaccgtctaccaataatatt |
3542485 |
T |
|
| Q |
314 |
tacggataactcgtcaaagtattttcgatactcgnnnnnnncttatcaacttggtcaacctatgannnnnnnnnccctcctataataataatcatcatta |
413 |
Q |
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|||| |||||||||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3542486 |
tacgattaactcgtcaaagtattttcgacactcgtttttttcttatcaacttggtcaacctatcttcttttttttcctcctataataataatcatcatta |
3542585 |
T |
|
| Q |
414 |
aatatcaaatactttatatcatatgattctatcctatcacaagga----------aacacaaccttttcttcttaaaaaccaatcaattcattcattatc |
503 |
Q |
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||||||| ||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3542586 |
aatatcatatactttatatcatatgatcctatcctatcacaaggaaacacaacacaacacaaccttttcttcttaaaaaccaatcaattcattcattatc |
3542685 |
T |
|
| Q |
504 |
ttccaacacaacacaaacacagaacaaaacatcatcaaaccttgccgttgatggaaaattgtcttacgatcaaacctcacataggattcttcacaagacc |
603 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
3542686 |
ttccaacacaacacaaacacagaacaaaacatcatcaaaccttgccgttgatggaaaattgtcttacaatcaaacctcacataggattcttcacaagacc |
3542785 |
T |
|
| Q |
604 |
ta |
605 |
Q |
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|| |
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| T |
3542786 |
ta |
3542787 |
T |
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