View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_low_43 (Length: 302)
Name: NF19836_low_43
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_low_43 |
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Alignment Details
Target: chr3 (Bit Score: 150; Significance: 3e-79; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 134 - 291
Target Start/End: Original strand, 50679503 - 50679660
Alignment:
| Q |
134 |
ttccataatttaatagcaaagaaactataaagatcatcaattttgttaattatgttccttttttcttttatttcaaaagagcctaacaatgagattcaca |
233 |
Q |
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| T |
50679503 |
ttccataatttaatagcaaagaaactataaagatcatcaattttgtaaattacgttccttttttcttttatttcaaaagagcctaacaatgagattcaca |
50679602 |
T |
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| Q |
234 |
ttcactaaatattgaagagtggaaattttttggtttaaacatgtgtctcatcattcat |
291 |
Q |
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| T |
50679603 |
ttcactaaatattgaagagtggaaattttttggtttaaacatgtgtctcatcattcat |
50679660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 50679472 - 50679503
Alignment:
| Q |
18 |
agatgagatctaataacttagatccttttcct |
49 |
Q |
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| T |
50679472 |
agatgagatctaataacttagatccttttcct |
50679503 |
T |
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