View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_low_51 (Length: 267)
Name: NF19836_low_51
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_low_51 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 35364703 - 35364470
Alignment:
| Q |
18 |
aaagggtttcgtaattattttctaacttacaacgaattattggtgaacaggatttgttacatcaaagaaagcttgttgtgagtatggcccatacaatggg |
117 |
Q |
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| T |
35364703 |
aaagggtttcataattattttctaacttacaacgaattattggtgaacaggatttgttacatcaaagaaagcttgttgtgagtatggcccatacaatggg |
35364604 |
T |
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| Q |
118 |
attaaattatgcacacctcttgcaaacttgtgccaaaatcgagacctctatgcattttgggattcaatccatccatctgaaaaagcttgcagaatcatag |
217 |
Q |
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| T |
35364603 |
attaaattatgcacacctcttgcaaacttgtgccaaaatcgagacctctatgcattttgggattcaatccatccatctgaaaaagcttgcagaatcatag |
35364504 |
T |
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| Q |
218 |
tccaacaaatcatgaatggctccaatgagtatat |
251 |
Q |
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| T |
35364503 |
tccaacaaatcttgaatggctccaatgagtatat |
35364470 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 63 - 251
Target Start/End: Complemental strand, 35376422 - 35376234
Alignment:
| Q |
63 |
aacaggatttgttacatcaaagaaagcttgttgtgagtatggcccatacaatgggattaaattatgcacacctcttgcaaacttgtgccaaaatcgagac |
162 |
Q |
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| T |
35376422 |
aacaggatttgttacatcaaagatagcttgttgtggacaaggcccttacaatgggattggactatgcacacccctttcaaacttgtgccaaaatcgagac |
35376323 |
T |
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| Q |
163 |
ctctatgcattttgggattcaatccatccatctgaaaaagcttgcagaatcatagtccaacaaatcatgaatggctccaatgagtatat |
251 |
Q |
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| T |
35376322 |
ctttatgcattttgggatccattccatccatctgaaaaagctagcagaatcatagtgcaacagatcttgactggctccaatgagtatat |
35376234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 63 - 224
Target Start/End: Complemental strand, 35357867 - 35357706
Alignment:
| Q |
63 |
aacaggatttgttacatcaaagaaagcttgttgtgagtatggcccatacaatgggattaaattatgcacacctcttgcaaacttgtgccaaaatcgagac |
162 |
Q |
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|||||||||||||||| ||||| | |||||||||| | || | || ||| |||||| | | || |||||| || |||| ||||||| ||||||| || |
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| T |
35357867 |
aacaggatttgttacagcaaaggatgcttgttgtggtcaagggcgattcaacgggattggactgtgtacacctatttcaaaattgtgcccaaatcgaaac |
35357768 |
T |
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| Q |
163 |
ctctatgcattttgggattcaatccatccatctgaaaaagcttgcagaatcatagtccaaca |
224 |
Q |
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| T |
35357767 |
ctttatgcattttgggatgcatttcatccatctgaaaaagctagcagaatcatagtccaaca |
35357706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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