View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_low_56 (Length: 258)
Name: NF19836_low_56
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_low_56 |
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Alignment Details
Target: chr7 (Bit Score: 211; Significance: 1e-116; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 31063829 - 31063583
Alignment:
| Q |
1 |
aatggcaaacttcccacatcgcagcgtacagcacgtgactttgtaggtcacggtactcatacactatcaacagccggtggaaacttcgtaccaggtgcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31063829 |
aatggcaaacttcccacatcgcagcgtacagcacgtgactttgtaggtcacggtactcatacactatcaacagccggtggaaacttcgtaccaggtgcaa |
31063730 |
T |
|
| Q |
101 |
gcatatttggtattggcaatggtaccataaaaggaggttcaccaagagctagggttgcaacctacaaagtgtgttggtctctaaccgatgctgctagttg |
200 |
Q |
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|||||||| ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||| |||||||| |
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| T |
31063729 |
gcatatttaacattggaaatggtaccataaaaggaggttcaccaagagctagagttgcaacctacaaagtgtgctggtctctaacagatgccgctagttg |
31063630 |
T |
|
| Q |
201 |
ctttggtgctgacgtattatctgctattgatcaagcaattgatgatg |
247 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
31063629 |
ctttggtgctgatgtattatctgctattgatcaagcaattgatgatg |
31063583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 28 - 247
Target Start/End: Complemental strand, 31108889 - 31108670
Alignment:
| Q |
28 |
acagcacgtgactttgtaggtcacggtactcatacactatcaacagccggtggaaacttcgtaccaggtgcaagcatatttggtattggcaatggtacca |
127 |
Q |
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||||| |||||||| || || || |||||||| |||||||||||||| |||||||| |||||||||||||||||||||||| ||||| |||||||||| |
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| T |
31108889 |
acagcgcgtgacttcgttggccatggtactcacacactatcaacagctggtggaaatttcgtaccaggtgcaagcatatttaacattggaaatggtacca |
31108790 |
T |
|
| Q |
128 |
taaaaggaggttcaccaagagctagggttgcaacctacaaagtgtgttggtctctaaccgatgctgctagttgctttggtgctgacgtattatctgctat |
227 |
Q |
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| T |
31108789 |
taaaaggaggttcaccaagagctagagttgcaacctacaaagtgtgctggtctctaacagatgccactagttgctttggtgctgatgtattatctgctat |
31108690 |
T |
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| Q |
228 |
tgatcaagcaattgatgatg |
247 |
Q |
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|||||||||||||||||||| |
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| T |
31108689 |
tgatcaagcaattgatgatg |
31108670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 28 - 181
Target Start/End: Complemental strand, 31051349 - 31051196
Alignment:
| Q |
28 |
acagcacgtgactttgtaggtcacggtactcatacactatcaacagccggtggaaacttcgtaccaggtgcaagcatatttggtattggcaatggtacca |
127 |
Q |
| |
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||||||||||||||| || || |||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
31051349 |
acagcacgtgacttttacggccatggtactcacacactatcaacagctggtggaaacttcgtaccaggtgcaagcatatttggtatcggcaatggtacca |
31051250 |
T |
|
| Q |
128 |
taaaaggaggttcaccaagagctagggttgcaacctacaaagtgtgttggtctc |
181 |
Q |
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| T |
31051249 |
ttaaaggtggttcaccaaaatcaagagttgtaacctacaaagtgtgttggtctc |
31051196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 28 - 240
Target Start/End: Complemental strand, 31146639 - 31146427
Alignment:
| Q |
28 |
acagcacgtgactttgtaggtcacggtactcatacactatcaacagccggtggaaacttcgtaccaggtgcaagcatatttggtattggcaatggtacca |
127 |
Q |
| |
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||||| || ||||||||||| || || || || |||||||||||||| |||||||||||||||| | |||| |||||||||||||||||| ||||||| |
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| T |
31146639 |
acagcgcgagactttgtaggccatgggacacacacactatcaacagcaggtggaaacttcgtacaaaacgcaaccatatttggtattggcaacggtacca |
31146540 |
T |
|
| Q |
128 |
taaaaggaggttcaccaagagctagggttgcaacctacaaagtgtgttggtctctaaccgatgctgctag-ttgctttggtgctgacgtattatctgcta |
226 |
Q |
| |
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||||||| |||||||||||| | || |||||||||||||||| |||||||||||||| |||| || ||| ||||||||||| || |||||| |||||| |
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| T |
31146539 |
taaaaggtggttcaccaagatcaagagttgcaacctacaaagcatgttggtctctaacagatgttg-tagactgctttggtgccgatgtattagctgcta |
31146441 |
T |
|
| Q |
227 |
ttgatcaagcaatt |
240 |
Q |
| |
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|||||||||||||| |
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| T |
31146440 |
ttgatcaagcaatt |
31146427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 31201339 - 31201520
Alignment:
| Q |
1 |
aatggcaaacttcccacatcgcagcgtacagcacgtgactttgtaggtcacggtactcatacactatcaacagccggtggaaacttcgtaccaggtgcaa |
100 |
Q |
| |
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|||| ||| |||||| ||| ||| ||||| ||||| |||||| |||| |||||||||||||| ||||||||||| || |||||||| ||||||| ||||| |
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| T |
31201339 |
aatgacaagcttccctcatggcaacgtaccgcacgcgactttttaggccacggtactcatactctatcaacagctgggggaaactttgtaccagatgcaa |
31201438 |
T |
|
| Q |
101 |
gcatatttggtattggcaatggtaccataaaaggaggttcaccaagagctagggttgcaacctacaaagtgtgttggtctct |
182 |
Q |
| |
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| |||||| ||||||||||||||| ||||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |
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| T |
31201439 |
gtgtatttgctattggcaatggtactgtaaaaggtggttcgccaagagctagggttgcaacctacaaagtgtgctggtctct |
31201520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 28 - 240
Target Start/End: Complemental strand, 31164465 - 31164253
Alignment:
| Q |
28 |
acagcacgtgactttgtaggtcacggtactcatacactatcaacagccggtggaaacttcgtaccaggtgcaagcatatttggtattggcaatggtacca |
127 |
Q |
| |
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||||| || ||||||||||| || || || || |||||||||||||| |||||||||||||||| | |||| |||||||||||||||||| ||||||| |
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| T |
31164465 |
acagcgcgagactttgtaggccatgggacacacacactatcaacagcaggtggaaacttcgtacaaaacgcaaccatatttggtattggcaacggtacca |
31164366 |
T |
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| Q |
128 |
taaaaggaggttcaccaagagctagggttgcaacctacaaagtgtgttggtctctaaccgatgctgctag-ttgctttggtgctgacgtattatctgcta |
226 |
Q |
| |
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||||||| |||||||||||| | || |||||||||||||||| |||||||||||||| |||| || ||| ||||| ||||| || |||||| |||||| |
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| T |
31164365 |
taaaaggtggttcaccaagatcaagagttgcaacctacaaagcatgttggtctctaacagatgttg-tagactgcttcggtgccgatgtattagctgcta |
31164267 |
T |
|
| Q |
227 |
ttgatcaagcaatt |
240 |
Q |
| |
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|||||||||||||| |
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|
| T |
31164266 |
ttgatcaagcaatt |
31164253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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