View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_low_58 (Length: 254)
Name: NF19836_low_58
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_low_58 |
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Alignment Details
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 79 - 244
Target Start/End: Original strand, 31790017 - 31790182
Alignment:
| Q |
79 |
cttataaagaaacaagtagttaaaatattcatgcttgttataagatcttttcaattattccatcttgattttgacaaaatccttagtgcaatattataag |
178 |
Q |
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| T |
31790017 |
cttataaagaaacaagtagttaaaatattcatgcttgtcataagatcctttcaattattccatcttgattttgacaaaatccttagtgcaatattataag |
31790116 |
T |
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| Q |
179 |
catgacatatccaggtctgttactatatttgttgaacctttatttaatttcattgtacagtataat |
244 |
Q |
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| T |
31790117 |
catgacatatccaggtctgttactatatttgttgaacctttatttaatttcattgtacagtataat |
31790182 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 79 - 220
Target Start/End: Original strand, 31785067 - 31785213
Alignment:
| Q |
79 |
cttataaagaaacaagtagttaaaatattcatgcttgttataagatcttttcaattattccatcttgatt------ttgacaaaatccttagtgcaatat |
172 |
Q |
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| T |
31785067 |
cttataaagaaacaactagttaaaatattcatgtttgtcataagatctttgcaatttttctatcttgatttttttgttgataaaatccatagtacaatat |
31785166 |
T |
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| Q |
173 |
tataagcatgacatatcc-aggtctgttactatatttgttgaaccttta |
220 |
Q |
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| T |
31785167 |
--taagcatgacatatccaaggtctgttactatatttgttgaaccttta |
31785213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 31789939 - 31789991
Alignment:
| Q |
1 |
tctaagtgcaacagatctctgacgttgatgagccactgaaacccaactcgcat |
53 |
Q |
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| T |
31789939 |
tctaagtgcaagagatctctgacgttgatgagcctctgaaacccaacttgcat |
31789991 |
T |
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