View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19836_low_59 (Length: 250)

Name: NF19836_low_59
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19836_low_59
NF19836_low_59
[»] chr5 (2 HSPs)
chr5 (13-250)||(7822317-7822553)
chr5 (121-238)||(28662920-28663040)
[»] scaffold0002 (1 HSPs)
scaffold0002 (45-231)||(114798-114983)
[»] scaffold0351 (3 HSPs)
scaffold0351 (45-225)||(5374-5553)
scaffold0351 (45-226)||(13716-13896)
scaffold0351 (45-92)||(16-63)
[»] chr2 (1 HSPs)
chr2 (25-238)||(17830050-17830252)
[»] chr1 (2 HSPs)
chr1 (60-238)||(36687836-36688015)
chr1 (78-238)||(26024163-26024321)
[»] chr6 (1 HSPs)
chr6 (111-238)||(11303103-11303229)
[»] chr3 (2 HSPs)
chr3 (49-160)||(44125954-44126065)
chr3 (115-238)||(27545705-27545826)
[»] scaffold0248 (1 HSPs)
scaffold0248 (105-238)||(16841-16966)
[»] chr4 (1 HSPs)
chr4 (43-148)||(56339660-56339765)


Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 13 - 250
Target Start/End: Complemental strand, 7822553 - 7822317
Alignment:
Q  13 aaaatttaacttttggccaagtgtacgttgttttgattattttgtgcatctctatcacaattatatattttatcacaattccttgtttgattttgaatta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7822553 aaaatttaacttttggccaagtgtacgttgttttgattattttgtgcatctctatcacaattatatattttatcacaattccttgtttgattttgaatta 7822454  T
Q  113 tatgtgaaattatttttcaagtttaacttgattgtatttgtttaaccaattgtttttctttataaaattggttaacttgattgatctatatttatatttt 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7822453 tatgtgaaattatttttcaagtttaacttgattgtatttgtttaaccaattgtttttctttataaaattggttaacttgattgatctatatttatatttt 7822354  T
Q  213 tgcatataatttttgttgaaaaatttattaatccattt 250  Q
    |||||||||||||||||| |||||||||||||||||||    
T  7822353 tgcatataatttttgttg-aaaatttattaatccattt 7822317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 121 - 238
Target Start/End: Complemental strand, 28663040 - 28662920
Alignment:
Q  121 attatttttcaagtttaacttgattgtatttgtttaaccaattgtttttctttataaaatt--ggttaacttgattgatctatatttatattttt-gcat 217  Q
    |||||||||||||||||||||||||||||||  |||||||| | ||||||| |  |  |||  |||||||||||||||||||||||||||||||| ||||    
T  28663040 attatttttcaagtttaacttgattgtatttccttaaccaagtttttttctcttcatgattatggttaacttgattgatctatatttatatttttggcat 28662941  T
Q  218 ataatttttgttgaaaaattt 238  Q
     ||||||||||||| ||||||    
T  28662940 gtaatttttgttgagaaattt 28662920  T

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Target: scaffold0002 (Bit Score: 119; Significance: 7e-61; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 45 - 231
Target Start/End: Original strand, 114798 - 114983
Alignment:
Q  45 ttgattattttgtgcatctctatcacaattatatattttatcacaattccttgtttgattttgaattatatgtgaaattatttttcaagtttaacttgat 144  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||| ||| |||  | |||||| |||||||||||||||||||||||||||||||||    
T  114798 ttgattattgtgtgcacctctatcacaattatatattttatcacaatttcttatttagtcttgaatcatatgtgaaattatttttcaagtttaacttgat 114897  T
Q  145 tgtatttgtttaaccaattgtttttctttataaaattggttaacttgattgatctatatttatatttttgcatataatttttgttga 231  Q
    ||||||||||||||||||| |||||||| ||||   ||||||| |||||||||||||| ||||||||||||||||||||||| ||||    
T  114898 tgtatttgtttaaccaatt-tttttcttcataattatggttaatttgattgatctatacttatatttttgcatataattttttttga 114983  T

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Target: scaffold0351 (Bit Score: 117; Significance: 1e-59; HSPs: 3)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 45 - 225
Target Start/End: Complemental strand, 5553 - 5374
Alignment:
Q  45 ttgattattttgtgcatctctatcacaattatatattttatcacaattccttgtttgattttgaattatatgtgaaattatttttcaagtttaacttgat 144  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||| ||| |||  | |||||| |||||||||||||||||||||||||||||||||    
T  5553 ttgattattgtgtgcacctctatcacaattatatattttatcacaatttcttatttagtcttgaatcatatgtgaaattatttttcaagtttaacttgat 5454  T
Q  145 tgtatttgtttaaccaattgtttttctttataaaattggttaacttgattgatctatatttatatttttgcatataatttt 225  Q
    ||||||||||||||||||| |||||||| ||||   ||||||| |||||||||||||| ||||||||||||||||||||||    
T  5453 tgtatttgtttaaccaatt-tttttcttcataattatggttaatttgattgatctatacttatatttttgcatataatttt 5374  T

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Target: scaffold0351; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 45 - 226
Target Start/End: Complemental strand, 13896 - 13716
Alignment:
Q  45 ttgattattttgtgcatctctatcacaattatatattttatcacaattccttgtttgattttgaattatatgtgaaattatttttcaagtttaacttgat 144  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||| ||| |||  | ||| || |||||||||||||||||||||||||||||||||    
T  13896 ttgattattgtgtgcacctctatcacaattatatattttatcacaatttcttatttagtcttgcatcatatgtgaaattatttttcaagtttaacttgat 13797  T
Q  145 tgtatttgtttaaccaattgtttttctttataaaattggttaacttgattgatctatatttatatttttgcatataattttt 226  Q
    ||||||||||||||||||| |||||||| ||||   | ||||| |||||||||||||| |||||||||||||||||||||||    
T  13796 tgtatttgtttaaccaatt-tttttcttcataattattgttaatttgattgatctatacttatatttttgcatataattttt 13716  T

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Target: scaffold0351; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 45 - 92
Target Start/End: Complemental strand, 63 - 16
Alignment:
Q  45 ttgattattttgtgcatctctatcacaattatatattttatcacaatt 92  Q
    ||||||||| |||||| |||||||||||||||||||||||||||||||    
T  63 ttgattattgtgtgcacctctatcacaattatatattttatcacaatt 16  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 25 - 238
Target Start/End: Complemental strand, 17830252 - 17830050
Alignment:
Q  25 ttggccaagtgtacgttgttttgattattttgtgcatctctatcacaattatatattttatcacaattccttgtttgattttgaattatatgtgaaatta 124  Q
    |||||||||| ||  |||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||  | |||||| |||||||||||||    
T  17830252 ttggccaagtttattttgttttgattattgtgtgcatctctatcacaattatatattttatcacaattcattatttactcttgaatcatatgtgaaatta 17830153  T
Q  125 tttttcaagtttaacttgattgtatttgtttaaccaattgtttttctttataaaattggttaacttgattgatctatatttatatttttgcatataattt 224  Q
    ||||||||||||||||||||||||||  |||||| |||| ||||            ||||||||||||||||||||||||||||||||||||||||||||    
T  17830152 tttttcaagtttaacttgattgtattcatttaactaattttttt-----------atggttaacttgattgatctatatttatatttttgcatataattt 17830064  T
Q  225 ttgttgaaaaattt 238  Q
    ||||||||||||||    
T  17830063 ttgttgaaaaattt 17830050  T

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Target: chr1 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 60 - 238
Target Start/End: Original strand, 36687836 - 36688015
Alignment:
Q  60 atctctatcacaattatatattttatcacaattccttgtttgattttgaattatatgtgaaattatttttcaagtttaacttgattgtatttgtttaacc 159  Q
    |||||| ||||||||||  ||||||||||||||  || |||  | |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  36687836 atctctgtcacaattatgcattttatcacaattttttatttagtcttgaatcatatgtgaaattatttttcaagtttaacttgattgtatttgtttaacc 36687935  T
Q  160 aattgtt-tttctttataaaattggttaacttgattgatctatatttatatttttgcatataatttttgttgaaaaattt 238  Q
    |||| || |||||| ||||   ||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||||    
T  36687936 aatttttctttcttcataattatggttaacttgattgatctgtatttatattcttgcatataatttttgttgagaaattt 36688015  T

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Target: chr1; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 78 - 238
Target Start/End: Original strand, 26024163 - 26024321
Alignment:
Q  78 tattttatcacaattccttgtttgattttgaattatatgtgaaattatttttcaagtttaacttgattgtatttgtttaaccaattgtttttctttataa 177  Q
    |||||||||| ||||| || |||  | |||||| |||||||||||||||||||||||||||||||||||||||||||||||||  | |||||||| || |    
T  26024163 tattttatcagaattctttatttagtcttgaatcatatgtgaaattatttttcaagtttaacttgattgtatttgtttaacca--tttttttcttcatga 26024260  T
Q  178 aattggttaacttgattgatctatatttatatttttgcatataatttttgttgaaaaattt 238  Q
        ||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||    
T  26024261 ttacggttaacttgattgatctatatttatatttttgcatatagtcattgttgaaaaattt 26024321  T

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Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 111 - 238
Target Start/End: Original strand, 11303103 - 11303229
Alignment:
Q  111 tatatgtgaaattatttttcaagtttaacttgattgtatttgtttaaccaattgtttttctttataaaattggttaacttgattgatctatatttatatt 210  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||   |||||||||||||||||||| |||| ||||    
T  11303103 tatatgtgaaagtatttttcaagtttaacttgattgtatttgtttaaccaatt-tttttcttcataattatggttaacttgattgatctacatttgtatt 11303201  T
Q  211 tttgcatataatttttgttgaaaaattt 238  Q
    ||||||||||||||||||||| ||||||    
T  11303202 tttgcatataatttttgttgagaaattt 11303229  T

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Target: chr3 (Bit Score: 84; Significance: 5e-40; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 49 - 160
Target Start/End: Complemental strand, 44126065 - 44125954
Alignment:
Q  49 ttattttgtgcatctctatcacaattatatattttatcacaattccttgtttgattttgaattatatgtgaaattatttttcaagtttaacttgattgta 148  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| |||  | |||||| ||||||||||||||||||||||| |||||||||||||    
T  44126065 ttattgtgtgcatctctatcacaattatatattttatcacaattccttatttagtcttgaatcatatgtgaaattatttttcaagtataacttgattgta 44125966  T
Q  149 tttgtttaacca 160  Q
    ||||||||||||    
T  44125965 tttgtttaacca 44125954  T

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Target: chr3; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 115 - 238
Target Start/End: Original strand, 27545705 - 27545826
Alignment:
Q  115 tgtgaaattattt--ttcaagtttaacttgattgtatttgtttaaccaattgtttttctttataaaattggttaacttgattgatctatatttatatttt 212  Q
    |||||||||||||  || ||||||||||||||||||||||||||||| ||| ||||| || |||    ||||||||||||||||||||||||||||||||    
T  27545705 tgtgaaattatttcttttaagtttaacttgattgtatttgtttaaccgatttttttttttcata----tggttaacttgattgatctatatttatatttt 27545800  T
Q  213 tgcatataatttttgttgaaaaattt 238  Q
    |   ||||||||||||||||||||||    
T  27545801 tatttataatttttgttgaaaaattt 27545826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0248 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 105 - 238
Target Start/End: Original strand, 16841 - 16966
Alignment:
Q  105 ttgaattatatgtgaaattatttttcaagtttaacttgattgtatttgtttaaccaattgtttttctttataaaattggttaacttgattgatctatatt 204  Q
    |||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||      ||||||||||||||||||||||||    
T  16841 ttgaatgatatgtgaaattatttttcaagtttatcttgattgtatttgtttaaccaatt-ttttttttta------tggttaacttgattgatctatatt 16933  T
Q  205 tatatttttgcatataatttttgttgaaaaattt 238  Q
    |||| ||||| |||||||||||||||||||||||    
T  16934 tata-ttttgtatataatttttgttgaaaaattt 16966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 43 - 148
Target Start/End: Complemental strand, 56339765 - 56339660
Alignment:
Q  43 ttttgattattttgtgcatctctatcacaattatatattttatcacaattccttgtttgattttgaattatatgtgaaattatttttcaagtttaacttg 142  Q
    ||||||||||| |||| |||||||||||||||||||||| |||||  | |  || |||  | |||||||||||||||||||||||| |||||||||||||    
T  56339765 ttttgattattgtgtgtatctctatcacaattatatattctatcattaatttttattttgtcttgaattatatgtgaaattattttccaagtttaacttg 56339666  T
Q  143 attgta 148  Q
    ||||||    
T  56339665 attgta 56339660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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