View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_low_61 (Length: 249)
Name: NF19836_low_61
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_low_61 |
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Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 13 - 233
Target Start/End: Original strand, 26783989 - 26784209
Alignment:
| Q |
13 |
agagatgaaaagttaagtaaaaaagaccttggtgctgcaaccgcgtttaggagggtgataatggaagggatataaacagttccccatttagggaccacaa |
112 |
Q |
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| T |
26783989 |
agagatgaaaagttaagtaaaaaagaccttggtgctgcaaccgcgtttaggagggtgatgatggtagggatataaacagttccccatttagggaccacaa |
26784088 |
T |
|
| Q |
113 |
tctcaggcaccataacagttgcaggtaacacaatgcaatataacacaaatgtgtttatgtggaccacaatcttccggacaaagaaaaaactgtaaaccat |
212 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
26784089 |
tctcaggcaccataacagttgcaggtaacacaatgcaatataacacaaatgtgtttatgtgaaccacaatcttccggacaaagaaaaaactgtaaaccat |
26784188 |
T |
|
| Q |
213 |
atatgttttcttccacaaaga |
233 |
Q |
| |
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||||||||||||||||||||| |
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| T |
26784189 |
atatgttttcttccacaaaga |
26784209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 19 - 233
Target Start/End: Original strand, 26817072 - 26817287
Alignment:
| Q |
19 |
gaaaagttaagtaaa-aaagaccttggtgctgcaaccgcgtttaggagggtgataatggaagggatataaacagttccccatttagggaccacaatctca |
117 |
Q |
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| T |
26817072 |
gaaaagttgagtaaataaagaccttggtgttccaacagcttttagaagggtgatgatggaagggacataaacagttccccatttagggaccacaatctca |
26817171 |
T |
|
| Q |
118 |
ggcaccataacagttgcaggtaacacaatgcaatataacacaaatgtgtttatgtggaccacaatcttccggacaaagaaaaaactgtaaaccatatatg |
217 |
Q |
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| T |
26817172 |
ggcaccataacagttgcaggtaacagaacgcaatagaacacaaatgtgtgtatgtgcaccacaatcttttgaacaaagaaaaaattgcaaacaatatata |
26817271 |
T |
|
| Q |
218 |
ttttcttccacaaaga |
233 |
Q |
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|||||||||||||| |
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| T |
26817272 |
acttcttccacaaaga |
26817287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 31 - 233
Target Start/End: Original strand, 26830728 - 26830930
Alignment:
| Q |
31 |
aaaaaagaccttggtgctgcaaccgcgtttaggagggtgataatggaagggatataaacagttccccatttagggaccacaatctcaggcaccataacag |
130 |
Q |
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|||||| ||||||| | | |||| || |||| |||||||| ||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||| |
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| T |
26830728 |
aaaaaataccttggagttccaacagcatttaaaagggtgatgatggaagggatataaacagctccccatttagggaccacaacctcaggtaccataacag |
26830827 |
T |
|
| Q |
131 |
ttgcaggtaacacaatgcaatataacacaaatgtgtttatgtggaccacaatcttccggacaaagaaaaaactgtaaaccatatatgttttcttccacaa |
230 |
Q |
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|||||||||||||||||||||| || ||||||||||| |||||| ||||||||||||| |||||||||||||||||||| | |||| | ||||||||||| |
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| T |
26830828 |
ttgcaggtaacacaatgcaatagaaaacaaatgtgttgatgtgggccacaatcttccgaacaaagaaaaaactgtaaacaacatatatcttcttccacaa |
26830927 |
T |
|
| Q |
231 |
aga |
233 |
Q |
| |
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||| |
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|
| T |
26830928 |
aga |
26830930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 17 - 214
Target Start/End: Original strand, 26790360 - 26790558
Alignment:
| Q |
17 |
atgaaaagttaagtaaa-aaagaccttggtgctgcaaccgcgtttaggagggtgataatggaagggatataaacagttccccatttagggaccacaatct |
115 |
Q |
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|||||||||| |||||| ||||||||||||| | |||| || || || |||||||| |||||||||| ||||||||||||||||||||||||||||| || |
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| T |
26790360 |
atgaaaagttgagtaaataaagaccttggtgttccaacagctttaagaagggtgatgatggaagggacataaacagttccccatttagggaccacaacct |
26790459 |
T |
|
| Q |
116 |
caggcaccataacagttgcaggtaacacaatgcaatataacacaaatgtgtttatgtggaccacaatcttccggacaaagaaaaaactgtaaaccatat |
214 |
Q |
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|||| |||||||||||||||||||||| |||||||| ||||||||||||| || ||| ||||||||||| || | |||||||||||||||||| |||| |
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| T |
26790460 |
caggaaccataacagttgcaggtaacaatatgcaatagaacacaaatgtgtgtacgtgcaccacaatctttcgaataaagaaaaaactgtaaacaatat |
26790558 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 161
Target Start/End: Complemental strand, 41920554 - 41920460
Alignment:
| Q |
67 |
gtgataatggaagggatataaacagttccccatttagggaccacaatctcaggcaccataacagttgcaggtaacacaatgcaatataacacaaa |
161 |
Q |
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||||||| ||||| |||||||||| ||||||||| ||||| ||| ||||| |||| ||| |||||||||| ||||||||||| |||||||| |
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| T |
41920554 |
gtgataactgaaggaatataaacagctccccattttgggactgcaacttcaggtaccaaaactgttgcaggtagaacaatgcaataaaacacaaa |
41920460 |
T |
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