View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_low_65 (Length: 238)
Name: NF19836_low_65
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_low_65 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 1444973 - 1444752
Alignment:
| Q |
1 |
agtgagttaaatgtaaagtggtttgtgtttggatgcgcaaaagtgatttttgcgaattcattttgtttggatattttagatcattcaaaattgattttgt |
100 |
Q |
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| T |
1444973 |
agtgagttaaatgaaaagtggtttgtgtttggatgcgcaaaagtgatttttgcgaattcattttgtttggatagtttagatcattcaaaattgattttgt |
1444874 |
T |
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| Q |
101 |
gtgtataattaccaaaagttgcaaagtgataaaatgtgaaagctgcaaatagtttcttaagctcaaaaccatgtttgaccgttgcaaactcatgttctga |
200 |
Q |
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| T |
1444873 |
gtgtataattaccaaaagttgcaaagtgataaaatgtgaaagctgcaaatagtttcttaagctcaaaaccacgtttgaccgttgcaaactcatgttctga |
1444774 |
T |
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| Q |
201 |
agttcccattgtggaaccaaac |
222 |
Q |
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| T |
1444773 |
agttcccattgtggaaccaaac |
1444752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 1 - 169
Target Start/End: Complemental strand, 1438017 - 1437848
Alignment:
| Q |
1 |
agtgagttaaatgtaaagtggtttgtg-tttggatgcgcaaaagtgatttttgcgaattcattttgtttggatattttagatcattcaaaattgattttg |
99 |
Q |
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| T |
1438017 |
agtgagttaaatgtaaagtggtttgtggtttggatgcgcaaaagtgatttttgtgaatttattttgtttggatatcttagatcattcaaaattgattttg |
1437918 |
T |
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| Q |
100 |
tgtgtataattaccaaaagttgcaaagtgataaaatgtgaaagctgcaaatagtttcttaagctcaaaac |
169 |
Q |
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| T |
1437917 |
agtgtacaattaccaaaagttgcaaggtgttaaaatgtgaaagctgcaaatagtttcttaagctcaaaac |
1437848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 181 - 222
Target Start/End: Complemental strand, 1437807 - 1437766
Alignment:
| Q |
181 |
gttgcaaactcatgttctgaagttcccattgtggaaccaaac |
222 |
Q |
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| T |
1437807 |
gttgcaaactcaagttctgaagttcccattgtggaaccaaac |
1437766 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 117891 - 117858
Alignment:
| Q |
1 |
agtgagttaaatgtaaagtggtttgtgtttggat |
34 |
Q |
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| T |
117891 |
agtgagttaaatgtaaagtggtttttgtttggat |
117858 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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