View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_low_66 (Length: 237)
Name: NF19836_low_66
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_low_66 |
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Alignment Details
Target: chr5 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 7822331 - 7822111
Alignment:
| Q |
1 |
tttattaatccatttcaatctagacaatttaagtatttctcttcaatctagtagtttttgcaatagacaaataaaccgataagataaagtagttataatc |
100 |
Q |
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| T |
7822331 |
tttattaatccatttcaatctagacaatttaagtatttatcttcaatctagtagtttttgctatagacaaataaactgataagataaagtagttataatc |
7822232 |
T |
|
| Q |
101 |
ggtatcacaaagatcaatttaattgaattttgcttagtgaacacattagcatatttgttgttactgataaattttaaaataatttaatatggagcatccc |
200 |
Q |
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| T |
7822231 |
ggtatcacaaagatcaatttaattgaattttgcttagtgaacacattagcatatttgttgttactgataaattttaaaataatttaatatgaagcatcca |
7822132 |
T |
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| Q |
201 |
tgaagtattgaagaatatatt |
221 |
Q |
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| T |
7822131 |
tgaaggattgaagaatatatt |
7822111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 18641868 - 18641664
Alignment:
| Q |
11 |
catttcaatctagacaatttaagtatttctcttcaatctagtagtttttgcaatagacaaataaaccgataagataaagtagttataatcggtatcacaa |
110 |
Q |
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| T |
18641868 |
catttcaatttagaccagttaagtatttctcgtcaatctagtagcttttgctatagatgaataatctgataagataaaatagttataatcgttaccacaa |
18641769 |
T |
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| Q |
111 |
agatcaatttaattgaattttgcttagtgaacacattagcatatttgttgttactgataaattttaaaataatttaatatggagcatccctgaagtattg |
210 |
Q |
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| T |
18641768 |
-gatcaatttaattgaatttagtttagtgaacccattagtatatttgtcattcttgataaattttagaataatttaatatggagcatccttgaaggattg |
18641670 |
T |
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| Q |
211 |
aagaat |
216 |
Q |
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|||||| |
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| T |
18641669 |
aagaat |
18641664 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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