View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_low_71 (Length: 215)
Name: NF19836_low_71
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_low_71 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 35137354 - 35137140
Alignment:
| Q |
1 |
tcaatggaatcagaaaactcaacgagcaggagattgaaaagtggaacaacgtcattttgactagaaataataggttcgcacctattgaatgagtagacta |
100 |
Q |
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| T |
35137354 |
tcaatggaatcagaaaactcaacgagcaggagattgaaaagtggaacaacgtcattttgactagaaataataggttcgcacctattgaatgagtagacta |
35137255 |
T |
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| Q |
101 |
tgctatttatttgaatgggaaaaaacatgttcaaacaattgagcaggatagtgcatgatgtgagacacaacatggatgtatgagtacaaaaagtaacttg |
200 |
Q |
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| T |
35137254 |
tgctatttatttgaatgggaaaaaacatgttcaaacaattgagcaggatagtgcatgatgtgagacacaacatggatgtatgagtacaaaaagtaacttg |
35137155 |
T |
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| Q |
201 |
tttaatgttgtaatt |
215 |
Q |
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| T |
35137154 |
tttaatgttgtaatt |
35137140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 35130138 - 35129928
Alignment:
| Q |
1 |
tcaatggaatcagaaaactcaacgagcaggagattgaaaagtggaacaacgtcattttgactagaaataataggttcgcacctattgaatgagtag---a |
97 |
Q |
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||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| | |
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| T |
35130138 |
tcaatggaatcagaaaacttgacgaggaggagattgaaaagtggaacaacgtcattttgactagaaataataggttggcgcctattgaatgagtagagta |
35130039 |
T |
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| Q |
98 |
ctatgctatttatttgaatgggaaaaaacatgttcaaacaattgagcaggatagtgc---atgatgtgagacacaacatggatgtatgagtacaaaaagt |
194 |
Q |
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| T |
35130038 |
ctatgctattt------atgggaaaaaacatgttcaaacaattcagcagagttgtgcatgatgatgtgagacacaacatggatgtatga----caaatgt |
35129949 |
T |
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| Q |
195 |
aacttgtttaatgttgtaatt |
215 |
Q |
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| T |
35129948 |
aacttgtttaatgttgtaatt |
35129928 |
T |
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