View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19836_low_9 (Length: 530)
Name: NF19836_low_9
Description: NF19836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19836_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 276 - 514
Target Start/End: Original strand, 37975629 - 37975867
Alignment:
| Q |
276 |
taggaactgtaaaatcatgatcgtcaggttctatgattaatgtggtagggctcacatatgtaataagggtgtggtcattattgatagcttatcagtgttc |
375 |
Q |
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| T |
37975629 |
taggaactctaaaatcatgatcgtcaggttctatgattaatgtggtagggctcacatatgtaataagggtgtggtcattattgatagcttatcagtgttc |
37975728 |
T |
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| Q |
376 |
tgtagtgttctaattaataccgaaacttcgttctattatatgctttggtttttaggataagggaaaagtataaggactgttgtgaatttgattaatgata |
475 |
Q |
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| T |
37975729 |
tgtagtgttctaattaataccgaaacttcgttctattatatgctttggtttttaggataacggaaaagtataaggactgttgtgaatttgattaatgata |
37975828 |
T |
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| Q |
476 |
ttctcttatataattcagttagaaatgtttgtcatacat |
514 |
Q |
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| T |
37975829 |
ttctcttatataattcagttagaaatgtttgtcatacat |
37975867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 9 - 196
Target Start/End: Original strand, 37975310 - 37975497
Alignment:
| Q |
9 |
agaagcaaaggaagaaactgaatcaaaatcaacaaaatgggtcgatgaatatggtgcaaaatgatcatgtgcatcattatgatgatgtagtgaattcagg |
108 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
37975310 |
agaagaaaaggaagaaactgaatcaaaatcaacaaaatgggtcgatgactatggtgcaaaatgatcatgtgcatcatcatgatgatgtagtgaattcagg |
37975409 |
T |
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| Q |
109 |
ttatggtcatggtggtggttttgtcgatcagtactcaaatttaaatgggacaacttctagaaatgatgccgcagtttcttatttctca |
196 |
Q |
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| T |
37975410 |
ttatggtcatggtggtggttttgtcgatcagtactcaaatttaaatgggacaacttctagaaatgatgccgcagtttcttatttctca |
37975497 |
T |
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