View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19837_high_1 (Length: 680)

Name: NF19837_high_1
Description: NF19837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19837_high_1
NF19837_high_1
[»] chr1 (1 HSPs)
chr1 (10-665)||(1238067-1238747)


Alignment Details
Target: chr1 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 10 - 665
Target Start/End: Complemental strand, 1238747 - 1238067
Alignment:
Q  10 attatactttgtctgaaatttgtatgaagtttagtaaactaaaggtttcttagagaattattactactctaannnnnnn--ataaaagttgaatgttgga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||    
T  1238747 attatactttgtctgaaatttgtatgaagtttagtaaactaaaggtttcttagagaattattactactctaatttttttttataaaagttgaatgttgga 1238648  T
Q  108 agagcccattcaccttttacttggtataaagagaagtgtgaacaaataaaaagaagtttaatcttgtttattttacaaagagacggacattttttatgtc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1238647 agagcccattcaccttttacttggtataaagagaagtgtgaacaaataaaaagaagtttaatcttgtttattttacaaagagacggacattttttatgtc 1238548  T
Q  208 atacttctttcttgatagatggtcttccttcttaacgaagaaagtgacattttttattgaccacgactttttgagtaaccactatttttaactcacactt 307  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1238547 atacttctttcttgatagatggtcttccttcttaacaaagaaagtgacattttttattgaccacgactttttgagtaaccactatttttaactcacactt 1238448  T
Q  308 actaaaattcaaattagtcaagaatcaactaatgcttatcatcaattatttacattgtaaatttagtttgaaaacatggtttttctttttaaatttgttc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||    
T  1238447 actaaaattcaaattagtcaagaatcaactaatgcttatcatcaattatttactttgtaaatttagtttgaaaacatagtttttctttttaaacttgttc 1238348  T
Q  408 ttgaaacaggtttaagaccaacgtaaatggttaagaccagctgaaatcccaggtgatgaatac----cgtgccac------------agtctgaatttta 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    ||||||||            |||||||||||||    
T  1238347 ttgaaacaggtttaagaccaacgtaaatggttaagaccagctgaaatcccaggtgatcaataccgtgcgtgccaccatgatatgattagtctgaatttta 1238248  T
Q  492 atacttccttacacaatgcactagagtcatttttatggttcc-------cacaaggtgtaatagatttacatttccgtttttctataagtgtatacttga 584  Q
    ||| ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1238247 atatttccttacacaatgcactagagtcatttttatggttcccacttcgcacaaggtgtaatagatttacatttccgtttttctataagtgtatacttgg 1238148  T
Q  585 ctgtgatggatgttatcagatttaaattatgcaatgagaaatgctgtttaaattttgaaaagtataaggcttgatatttat 665  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1238147 ctgtgatggatgttatcagatttaaattatgcaatgagaaatgctgtttaaattttgaaaagtataaggcttgatatttat 1238067  T

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