View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19837_high_3 (Length: 562)
Name: NF19837_high_3
Description: NF19837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19837_high_3 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-172; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-172
Query Start/End: Original strand, 16 - 330
Target Start/End: Original strand, 822864 - 823177
Alignment:
| Q |
16 |
atgcaaatgaagaattgagaaataatgaaatataaaagataactggaaaggtcacaaggatggggtaaaacagtattttaataatgaatgaagaagaaat |
115 |
Q |
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| T |
822864 |
atgcaaatgaagaattgagaaataatgaaatataaaagataactggaaaggtcacaaggatggggtaaaacagtattttaataatgaatgaagaagaaat |
822963 |
T |
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| Q |
116 |
taaaagttgatttcatccattcctcccaaaattggatggaaatcatggttctgataaagctctttgtgttaaataatataaaattttggaattaaatcaa |
215 |
Q |
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| T |
822964 |
taaaagttgatttcatccattcctcccaaa-ttggatggaaatcatggttctgataaagctctttgtgttaaataatataaaattttggaattaaatcaa |
823062 |
T |
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| Q |
216 |
gggaaatgatggtatagaaaaatgctaaatatagcgaatagtatattttcacgaaaatataacgaatggccgcgttgtgtataaattgtccatgtataag |
315 |
Q |
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| T |
823063 |
gggaaatgatggtatagaaaaatgctaaatatagcgaatagtatattttcacgaaaatataacgaatggccgcgttgtgtataaattgtccatgtataag |
823162 |
T |
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| Q |
316 |
ttatttatctctctc |
330 |
Q |
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| T |
823163 |
ttatttatctctctc |
823177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 356 - 549
Target Start/End: Original strand, 823180 - 823373
Alignment:
| Q |
356 |
tcaacaaagttaattggcacttgaatataacttaccatgattgttaataaataaaaattatattctccaaatcatggaagagttgtctctctataattga |
455 |
Q |
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| T |
823180 |
tcaacaaagttaattggcacttgaatataacttaccatgattgttaataaataaaaattatattctccaaatcatggaagagttgtctctctataattga |
823279 |
T |
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| Q |
456 |
gccacatgtataaacgtaaggtggatctaaaaggtgcaatggtgatatatagttgtagaaacatttgagtgtaaatgtggcgaatgatatatat |
549 |
Q |
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| T |
823280 |
gccacatgtataaacgtaaggtggatctaaaaggtgcaatggtgatatatagttgtagaaacatttgagtgtaaatgtggcgaatgatatatat |
823373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 481 - 527
Target Start/End: Complemental strand, 27335043 - 27334997
Alignment:
| Q |
481 |
tctaaaaggtgcaatggtgatatatagttgtagaaacatttgagtgt |
527 |
Q |
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| T |
27335043 |
tctaaaagttgcaatggtgatatatggttgtaaaatcatttgagtgt |
27334997 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 234 - 330
Target Start/End: Complemental strand, 9413074 - 9412980
Alignment:
| Q |
234 |
aaaatgctaaatatagcgaatagtatattttcacgaaaatataacgaatggccgcgttgtgtataaattgtccatgtataagttatttatctctctc |
330 |
Q |
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| T |
9413074 |
aaaatgctaaatgtagcgaatactat--tttcacgaaaatataacgaatggccgcgttgtgtataaattgtccatgtataagttatttctctctctc |
9412980 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 367 - 510
Target Start/End: Complemental strand, 5893345 - 5893202
Alignment:
| Q |
367 |
aattggcacttgaatataacttaccatgattgttaataaataaaaattatattctccaaatcatggaagag-ttgtctctctataattgagccacatgta |
465 |
Q |
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| T |
5893345 |
aattggcacttgaataaaacctactatgatcgttaatatataataac-atatactccagattatggaaaagcttttctctctataatggagccacataga |
5893247 |
T |
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| Q |
466 |
taaacgtaaggtggatctaaaaggtgcaatggtgatatatagttg |
510 |
Q |
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| T |
5893246 |
gaaatgtaaggtagttctataagttgcaatggtgatatatggttg |
5893202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 71; Significance: 7e-32; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 71; E-Value: 7e-32
Query Start/End: Original strand, 408 - 549
Target Start/End: Original strand, 35105579 - 35105723
Alignment:
| Q |
408 |
aaaaattatattctccaaatcatggaagagttgtctctctataattgagccacatgtataaacgtaaggtggatctaaaaggtgcaatggtgatatatag |
507 |
Q |
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| T |
35105579 |
aaaaaatatatactccaaattgtggaaggattttctctctataattgagccacatgtagaaatttaaggtggttctaaaaggtgcaatggtcatatatag |
35105678 |
T |
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| Q |
508 |
ttgtagaaacatt---tgagtgtaaatgtggcgaatgatatatat |
549 |
Q |
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| T |
35105679 |
ttgtagaaacattacgtgtatgtaaatgtggctaatgatatatat |
35105723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 351 - 412
Target Start/End: Original strand, 35105010 - 35105073
Alignment:
| Q |
351 |
gtgcatcaacaaagtta--attggcacttgaatataacttaccatgattgttaataaataaaaa |
412 |
Q |
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| T |
35105010 |
gtgcatcaacaaagttataattgacacatgaataaaacatacaataattgttaataaataaaaa |
35105073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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