View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19837_high_5 (Length: 285)
Name: NF19837_high_5
Description: NF19837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19837_high_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 30494199 - 30494464
Alignment:
| Q |
1 |
ataaatattttttcctgattgcttagaaccataacaatgtactcattatgccagaacactttcattttcaggtagatgaagnnnnnnncaacccttcatg |
100 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30494199 |
ataaatattttttc-tgattgcttagaaccataacaatgtactcattatgccagaacactttcattttcaggtagatgaagaaaaaaacaacccttcatg |
30494297 |
T |
|
| Q |
101 |
gaaggcaattggatatagtggacctgatcaagagttcaaagcgcagcgaaagaacaaaattttacataaaacatccaaagaaggacgacaagaaaaagaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30494298 |
gaaggcaattggatatagtggacctgatcaagagttcaaagcgcagcgaaagaacaaaattttacataaaacatccaaagaaggacgacaagaaaaagaa |
30494397 |
T |
|
| Q |
201 |
gattgtgatcatgatgatgaagaagttataggacctctttacaaaggccttgtcaatctgaactacc |
267 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
30494398 |
gattgtgatcatgatgatgaagaagttataggacctctttacgaaggccttgtcaatctgaactacc |
30494464 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 95 - 155
Target Start/End: Complemental strand, 10451132 - 10451072
Alignment:
| Q |
95 |
ttcatggaaggcaattggatatagtggacctgatcaagagttcaaagcgcagcgaaagaac |
155 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||| ||| |||||||| ||| ||||||| |
|
|
| T |
10451132 |
ttcatggaaagcaattggatactgtggacctgatccagaattcaaagctcagttaaagaac |
10451072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University