View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19837_low_1 (Length: 680)

Name: NF19837_low_1
Description: NF19837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19837_low_1
NF19837_low_1
[»] chr1 (1 HSPs)
chr1 (10-665)||(1238067-1238747)


Alignment Details
Target: chr1 (Bit Score: 537; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 537; E-Value: 0
Query Start/End: Original strand, 10 - 665
Target Start/End: Complemental strand, 1238747 - 1238067
Alignment:
Q  10 attatactttgtctgaaatttgtatgaagtttagtaaactaaaggtttcttagagaattattactactctaannnnnnn--ataaaagttgaatgttgga 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||    
T  1238747 attatactttgtctgaaatttgtatgaagtttagtaaactaaaggtttcttagagaattattactactctaatttttttttataaaagttgaatgttgga 1238648  T
Q  108 agagcccattcaccttttacttggtataaagagaagtgtgaacaaataaaaagaagtttaatcttgtttattttacaaagagacggacattttttatgtc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1238647 agagcccattcaccttttacttggtataaagagaagtgtgaacaaataaaaagaagtttaatcttgtttattttacaaagagacggacattttttatgtc 1238548  T
Q  208 atacttctttcttgatagatggtcttccttcttaacgaagaaagtgacattttttattgaccacgactttttgagtaaccactatttttaactcacactt 307  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1238547 atacttctttcttgatagatggtcttccttcttaacaaagaaagtgacattttttattgaccacgactttttgagtaaccactatttttaactcacactt 1238448  T
Q  308 actaaaattcaaattagtcaagaatcaactaatgcttatcatcaattatttacattgtaaatttagtttgaaaacatggtttttctttttaaatttgttc 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||    
T  1238447 actaaaattcaaattagtcaagaatcaactaatgcttatcatcaattatttactttgtaaatttagtttgaaaacatagtttttctttttaaacttgttc 1238348  T
Q  408 ttgaaacaggtttaagaccaacgtaaatggttaagaccagctgaaatcccaggtgatgaatac----cgtgccac------------agtctgaatttta 491  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    ||||||||            |||||||||||||    
T  1238347 ttgaaacaggtttaagaccaacgtaaatggttaagaccagctgaaatcccaggtgatcaataccgtgcgtgccaccatgatatgattagtctgaatttta 1238248  T
Q  492 atacttccttacacaatgcactagagtcatttttatggttcc-------cacaaggtgtaatagatttacatttccgtttttctataagtgtatacttga 584  Q
    ||| ||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||     
T  1238247 atatttccttacacaatgcactagagtcatttttatggttcccacttcgcacaaggtgtaatagatttacatttccgtttttctataagtgtatacttgg 1238148  T
Q  585 ctgtgatggatgttatcagatttaaattatgcaatgagaaatgctgtttaaattttgaaaagtataaggcttgatatttat 665  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1238147 ctgtgatggatgttatcagatttaaattatgcaatgagaaatgctgtttaaattttgaaaagtataaggcttgatatttat 1238067  T

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