View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19837_low_10 (Length: 212)
Name: NF19837_low_10
Description: NF19837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19837_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 177; Significance: 1e-95; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 24284232 - 24284423
Alignment:
| Q |
1 |
aggaaatgctgctgcagccaagaagctctatggaagcttattgtcaaaagctcaaactgaatatagacgacacagaacctttgcagcacttcgtgtgcga |
100 |
Q |
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| T |
24284232 |
aggaaatgctgctgcagccaagaagctctatggaagcttattgtcaaaagctccagctgaatatagacgacacagaacctttgcagcacttcgtgtgcga |
24284331 |
T |
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| Q |
101 |
gaactgggattgtgttagaaagcaaagtggagcccgtttgagcatttttaggaatcaaaagtgcagttgtggaaaagtaatgaacctagtaat |
193 |
Q |
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| T |
24284332 |
gaactgggattgtgttagaaa-caaagtggagcccgtttgagcatttttaggaatcaaaagtgcagttgtggaaaagtaatgaacctagtaat |
24284423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 185
Target Start/End: Original strand, 21199714 - 21199898
Alignment:
| Q |
1 |
aggaaatgctgctgcagccaagaagctctatggaagcttattgtcaaaagctcaaactgaatatagacgacacagaacctttgcagcacttcgtgtgcga |
100 |
Q |
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| T |
21199714 |
aggaaatgctactcgagccaaggaattccatggaagcttattgtcagaagatgaaactgaatatcgacgacacagaacctatgcagcactacatctgtgg |
21199813 |
T |
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| Q |
101 |
gaactgggattgtgttagaaagcaaagtggagcccgtttgagcatttttaggaatcaaaagtgcagttgtggaaaagtaatgaac |
185 |
Q |
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| T |
21199814 |
ggattgggattgtggtagaaaggaaagcgggaaccttttgagcttatttaggaatcaaatgtgcagttgtggaagagtaatgaac |
21199898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 185
Target Start/End: Complemental strand, 24232503 - 24232319
Alignment:
| Q |
1 |
aggaaatgctgctgcagccaagaagctctatggaagcttattgtcaaaagctcaaactgaatatagacgacacagaacctttgcagcacttcgtgtgcga |
100 |
Q |
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| T |
24232503 |
aggaaatgctactgcaaccaagaaactcgatggaagattactgccgacagctgaaactgaatatagacgacactgaacgcttgcagtactttgtgtgcga |
24232404 |
T |
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| Q |
101 |
gaactgggattgtgttagaaagcaaagtggagcccgtttgagcatttttaggaatcaaaagtgcagttgtggaaaagtaatgaac |
185 |
Q |
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| T |
24232403 |
gaactgggattgtagaagaaaggttagtggctgccttttgagcttttttaggaaccaaaaatgctattgtgggaaagtaatgaac |
24232319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 17 - 172
Target Start/End: Original strand, 21194477 - 21194632
Alignment:
| Q |
17 |
gccaagaagctctatggaagcttattgtcaaaagctcaaactgaatatagacgacacagaacctttgcagcacttcgtgtgcgagaactgggattgtgtt |
116 |
Q |
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| T |
21194477 |
gccaagaaattccatggaaagttattgtcagaagatgaaactgaatatcgacgacacagaacccatgaaacacttcatctgtgggaactgggattgtgtt |
21194576 |
T |
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| Q |
117 |
agaaagcaaagtggagcccgtttgagcatttttaggaatcaaaagtgcagttgtgg |
172 |
Q |
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| T |
21194577 |
agaaaggagagagggaaccttttgagcatatttaggaatcaaatgtgcagttgtgg |
21194632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 21 - 73
Target Start/End: Complemental strand, 3494787 - 3494735
Alignment:
| Q |
21 |
agaagctctatggaagcttattgtcaaaagctcaaactgaatatagacgacac |
73 |
Q |
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|||| ||| ||||||| |||||| || |||||||||||||||||||||||||| |
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| T |
3494787 |
agaaactcgatggaagattattgccagaagctcaaactgaatatagacgacac |
3494735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 91
Target Start/End: Complemental strand, 24154223 - 24154162
Alignment:
| Q |
30 |
atggaagcttattgtcaaaagctcaaactgaatatagacgacacagaacctttgcagcactt |
91 |
Q |
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| T |
24154223 |
atggaagcttattgtcatcaactcaaactgaacatcgacgaaacagaacccttgcagtactt |
24154162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 77
Target Start/End: Complemental strand, 24161145 - 24161089
Alignment:
| Q |
21 |
agaagctctatggaagcttattgtcaaaagctcaaactgaatatagacgacacagaa |
77 |
Q |
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|||| |||||||||||||||||| |||||| | ||| ||||||| ||||| |||||| |
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| T |
24161145 |
agaaactctatggaagcttattgccaaaagatgaaattgaatattgacgaaacagaa |
24161089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 4 - 94
Target Start/End: Original strand, 10989033 - 10989123
Alignment:
| Q |
4 |
aaatgctgctgcagccaagaagctctatggaagcttattgtcaaaagctcaaactgaatatagacgacacagaacctttgcagcacttcgt |
94 |
Q |
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| T |
10989033 |
aaatgctactgaagccaagaaactctacggaaacttattgccagaagctcaatctcaatatagacgacacagaaccattgcagcacttcgt |
10989123 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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