View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19837_low_2 (Length: 563)
Name: NF19837_low_2
Description: NF19837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19837_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 411; Significance: 0; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 13 - 553
Target Start/End: Complemental strand, 7565758 - 7565223
Alignment:
| Q |
13 |
attttaacccttgacactcactcactc----ggtatacctaattcagcagcgtccacaaaccgcaaccatgagcatgcgaccatttacagccggaacaag |
108 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
7565758 |
attttaacccttgacactcactcactcactcggtatacctaattcagcagcgtccacaaaccgcaaccatgagcaggcgaccatttacagccggaacaag |
7565659 |
T |
|
| Q |
109 |
aaatcctctcaacctatttactctattaacactcgatttgttgttagaaatcttgcataggctccccgtgaaatcacttttgacacttaggtgtgtatgt |
208 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
7565658 |
aaatcctctcaacctgtttactctattaacactcgatttgttgttagaaatcttgcataggctccccgtgaaatcacttttgacacttaggtgtgtgtgt |
7565559 |
T |
|
| Q |
209 |
aagtccttgaattcaataatttccgatcctaaattcgctaaagatcaccttagcttgtcacaaacccgacattatcacctcctcagatgcccgcggagta |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||||||||||||||||| ||| |
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| T |
7565558 |
aagtccttgaattcaataatttccgatcctaaattcgctaaagatcaccttcgcttgtcacaaacccgccattaccacctcctcagatgcccgtgga--- |
7565462 |
T |
|
| Q |
309 |
tgtttatgtttttaagaaggaagttcactctctccgatttccaacttccctctattttaagcaactcacctagcaccatcccagagacaaagattaagtt |
408 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
7565461 |
---atatgtttttaagaaggaagttcagtctctccgatttccaacttcgctctattttaagcaactcacctagcaccatc---gagacaaagattaagtt |
7565368 |
T |
|
| Q |
409 |
ccctttaaagactcgtgagattcatgctcaggtgattgactcttgcgatggcatcatctttttcagagtggaatgcgattaccaacatcgtagtatggta |
508 |
Q |
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||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||| | ||||| ||||| ||| ||||||| |
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| T |
7565367 |
ccctttaaacactcgtgacattcatgctcacgtgattgactcttgcgatggcatcatctttttcagagtgcaatacaattacaaacattgtaatatggta |
7565268 |
T |
|
| Q |
509 |
gcatggaacctttgtaccagaaaattgaagacattgccacctttg |
553 |
Q |
| |
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| T |
7565267 |
gcatggaacccttgtaccagaaaattgaagacattgccacctttg |
7565223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 150 - 301
Target Start/End: Complemental strand, 371657 - 371506
Alignment:
| Q |
150 |
tgttagaaatcttgcataggctccccgtgaaatcacttttgacacttaggtgtgtatgtaagtccttgaattcaataatttccgatcctaaattcgctaa |
249 |
Q |
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|||| ||||||||| | |||||| ||||||| ||||| |||||||| | |||||| || ||| |||||||||| || |||||||||||||||||||| || |
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| T |
371657 |
tgttggaaatcttgtacaggctcgccgtgaagtcactcttgacactcaagtgtgtctgcaagcccttgaattccattatttccgatcctaaattcgccaa |
371558 |
T |
|
| Q |
250 |
agatcaccttagcttgtcacaaacccgacattatcacctcctcagatgcccg |
301 |
Q |
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| T |
371557 |
agatcactttcgcttgtcaaagacccgtcattaccacctcctcatatgcccg |
371506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 1460381 - 1460250
Alignment:
| Q |
170 |
ctccccgtgaaatcacttttgacacttaggtgtgtatgtaagtccttgaattcaataatttccgatcctaaattcgctaaagatcaccttagcttgtcac |
269 |
Q |
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||||| ||||||||||| |||||||| | |||||| | ||| |||||||||| ||||||| ||||||||||| | |||||||||||| ||||||||| |
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| T |
1460381 |
ctccctgtgaaatcactcttgacactcaagtgtgtttccaagcccttgaattctttaatttctgatcctaaattttccaaagatcaccttcgcttgtcac |
1460282 |
T |
|
| Q |
270 |
aaacccgacattatcacctcctcagatgcccg |
301 |
Q |
| |
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| T |
1460281 |
agacccgccataacaacctcctcgtatgcccg |
1460250 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 170 - 301
Target Start/End: Complemental strand, 1471769 - 1471638
Alignment:
| Q |
170 |
ctccccgtgaaatcacttttgacacttaggtgtgtatgtaagtccttgaattcaataatttccgatcctaaattcgctaaagatcaccttagcttgtcac |
269 |
Q |
| |
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||||| ||||||||||| |||||||| | |||||| | ||| ||||||||| ||||||| ||||| ||||| || |||| ||||||| |||||| || |
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| T |
1471769 |
ctccctgtgaaatcactcttgacactcaagtgtgtttccaagcccttgaatttcttaatttctgatcccaaatttgccaaaggtcaccttcgcttgttac |
1471670 |
T |
|
| Q |
270 |
aaacccgacattatcacctcctcagatgcccg |
301 |
Q |
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| T |
1471669 |
acacccgtcataaccacctcctcgtatgcccg |
1471638 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 443 - 472
Target Start/End: Complemental strand, 1442681 - 1442652
Alignment:
| Q |
443 |
attgactcttgcgatggcatcatctttttc |
472 |
Q |
| |
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|||||||||||||||||||||||||||||| |
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| T |
1442681 |
attgactcttgcgatggcatcatctttttc |
1442652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 129 - 289
Target Start/End: Complemental strand, 1442992 - 1442832
Alignment:
| Q |
129 |
ctctattaacactcgatttgttgttagaaatcttgcataggctccccgtgaaatcacttttgacacttaggtgtgtatgtaagtccttgaattcaataat |
228 |
Q |
| |
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|||| ||| |||| ||| || ||||||||||||| | |||||||| |||| || || |||||||| | || || || ||| ||||| ||| || || |
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| T |
1442992 |
ctctgttatcacttgatctggtgttagaaatcttttacaggctccctttgaagtcgctattgacactcaagtaagtctgcaagctcttgatttccattat |
1442893 |
T |
|
| Q |
229 |
ttccgatcctaaattcgctaaagatcaccttagcttgtcacaaacccgacattatcacctc |
289 |
Q |
| |
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||| |||||||| ||| | |||||||||||| ||||||||| ||||| ||||| |||||| |
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| T |
1442892 |
ttctgatcctaacttcaccaaagatcaccttcgcttgtcacggacccgccattaccacctc |
1442832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 126 - 270
Target Start/End: Original strand, 55418920 - 55419064
Alignment:
| Q |
126 |
ttactctattaacactcgatttgttgttagaaatcttgcataggctccccgtgaaatcacttttgacacttaggtgtgtatgtaagtccttgaattcaat |
225 |
Q |
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||||||||||| | || |||||||||||||||||| || ||||||| || ||||| ||||| ||| ||| | |||||| || ||| |||||||| | | |
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| T |
55418920 |
ttactctattatcccttgatttgttgttagaaatcctgtataggcttcctgtgaagtcactcatgatactcaagtgtgtttgcaagcccttgaatgcctt |
55419019 |
T |
|
| Q |
226 |
aatttccgatcctaaattcgctaaagatcaccttagcttgtcaca |
270 |
Q |
| |
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|||||| ||||| | ||| || ||||||||| || |||| ||||| |
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| T |
55419020 |
aatttctgatcccatatttgccaaagatcacattcgcttctcaca |
55419064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 140 - 293
Target Start/End: Original strand, 3926258 - 3926411
Alignment:
| Q |
140 |
ctcgatttgttgttagaaatcttgcataggctccccgtgaaatcacttttgacacttaggtgtgtatgtaagtccttgaattcaataatttccgatccta |
239 |
Q |
| |
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|||||||| || |||||||||||| |||||||||| ||||| ||||| | || | ||||| | ||||||||||||||| ||||||| ||||| | |
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| T |
3926258 |
ctcgatttattcttagaaatcttgtataggctccctgtgaagtcactcctagtgctcaaatgtgtttccaagtccttgaattcattaatttctgatccca |
3926357 |
T |
|
| Q |
240 |
aattcgctaaagatcaccttagcttgtcacaaacccgacattatcacctcctca |
293 |
Q |
| |
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|||||| ||| |||||||| ||||||||| || ||| ||| |||||||||| |
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|
| T |
3926358 |
aattcgtcaaacatcaccttcacttgtcacagactagaccttaccacctcctca |
3926411 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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