View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19837_low_4 (Length: 429)

Name: NF19837_low_4
Description: NF19837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19837_low_4
NF19837_low_4
[»] chr5 (5 HSPs)
chr5 (244-424)||(1504121-1504306)
chr5 (54-216)||(1503948-1504109)
chr5 (71-163)||(1500586-1500680)
chr5 (339-387)||(1481556-1481603)
chr5 (339-387)||(1491446-1491493)
[»] chr7 (5 HSPs)
chr7 (315-386)||(5283720-5283792)
chr7 (315-388)||(5290336-5290410)
chr7 (315-388)||(5301905-5301979)
chr7 (316-360)||(5314358-5314401)
chr7 (339-388)||(5309576-5309626)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 3e-86; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 244 - 424
Target Start/End: Original strand, 1504121 - 1504306
Alignment:
Q  244 ttggtttgttgaatatcaaattttgaataatgcaaagtgttttattcaaacatgggatgc-----tactaacaactttcatataaaaaccatctcaccct 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||| ||    
T  1504121 ttggtttgttgaatatcaaattttgaataatgcaaagtgttttattcaaacatgggatgctatgctactaacaactttcatataaaaaccatctcactct 1504220  T
Q  339 aaacatctttccaccacaacactcttcacccctttcctttctacaacaagaactgaaaaccagttaagttcagaatataaatatat 424  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1504221 aaacatctttccaccacaacactcttcacccctttcctttctacaacaagaactgaaaaccagttaagttcagaatataaatatat 1504306  T

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Target: chr5; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 54 - 216
Target Start/End: Original strand, 1503948 - 1504109
Alignment:
Q  54 ttaaaaatatcagaaataaaagagggaatgagtgatgactgaaatatttgtaacttgcaaaacccaaaa-attcaaccttttcagctcatttccaaaact 152  Q
    |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||    
T  1503948 ttaaaaatatcagaaataaaagagggaatgagtggtgagtgaaatatttgtaacttgcaaaacccaaaaaattcaacgttttcagctcatttccaaaact 1504047  T
Q  153 caacctcaactctcaatttattctttttgactagagagagtcttcatcaaagtcatggatgcag 216  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||    
T  1504048 caacctcaactctcaatttattctttttgact--agagagtcttcatcaaagtcatggacgcag 1504109  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 71 - 163
Target Start/End: Original strand, 1500586 - 1500680
Alignment:
Q  71 aaaagagggaatgagtgatgactgaaatatttgtaacttgcaaaacccaaaaattcaacc--ttttcagctcatttccaaaactcaacctcaact 163  Q
    ||||||||||||||| | ||| |||||||||||||||   ||||| ||||| ||| ||||  |||||| |||||||||||| |||||||||||||    
T  1500586 aaaagagggaatgagcgttgagtgaaatatttgtaacccacaaaatccaaacatttaaccatttttcatctcatttccaaagctcaacctcaact 1500680  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 387
Target Start/End: Original strand, 1481556 - 1481603
Alignment:
Q  339 aaacatctttccaccacaacactcttcacccctttcctttctacaacaa 387  Q
    |||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  1481556 aaacatgttttcaccacaacactcttca-ccctttcctttctacaacaa 1481603  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 339 - 387
Target Start/End: Original strand, 1491446 - 1491493
Alignment:
Q  339 aaacatctttccaccacaacactcttcacccctttcctttctacaacaa 387  Q
    |||||| ||| ||||||||||||||||| ||||||||||||||||||||    
T  1491446 aaacatgttttcaccacaacactcttca-ccctttcctttctacaacaa 1491493  T

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Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 315 - 386
Target Start/End: Original strand, 5283720 - 5283792
Alignment:
Q  315 ttcatataaaaaccatctcaccctaaacatctttccaccacaacactcttcacccctttccttt-ctacaaca 386  Q
    ||||||||||||||||||||||| ||| |||||| ||||||||||||||||| ||||||||||| ||||||||    
T  5283720 ttcatataaaaaccatctcaccccaaatatctttgcaccacaacactcttcaaccctttcctttactacaaca 5283792  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 388
Target Start/End: Complemental strand, 5290410 - 5290336
Alignment:
Q  315 ttcatataaaaaccatctcaccctaaacatctttccaccacaacactcttc-acccctttcctttctacaacaag 388  Q
    |||||||||||||||||||| || |||||| | | ||||||||||| |||| |||| |||| |||||||||||||    
T  5290410 ttcatataaaaaccatctcatcccaaacatttctgcaccacaacacacttcaacccttttcttttctacaacaag 5290336  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 315 - 388
Target Start/End: Original strand, 5301905 - 5301979
Alignment:
Q  315 ttcatataaaaaccatctcaccctaaacatctttccaccacaacactcttc-acccctttcctttctacaacaag 388  Q
    |||||||||||||||||||| || |||||| | | ||||||||||| |||| |||| |||| |||||||||||||    
T  5301905 ttcatataaaaaccatctcatcccaaacatttctgcaccacaacacacttcaacccttttcttttctacaacaag 5301979  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 316 - 360
Target Start/End: Original strand, 5314358 - 5314401
Alignment:
Q  316 tcatataaaaaccatctcaccctaaacatctttccaccacaacac 360  Q
    |||||||||||||||||||||| |||||||||| |||||||||||    
T  5314358 tcatataaaaaccatctcaccc-aaacatctttgcaccacaacac 5314401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 339 - 388
Target Start/End: Original strand, 5309576 - 5309626
Alignment:
Q  339 aaacatctttccaccacaacactcttcacccctttccttt-ctacaacaag 388  Q
    |||||| ||| ||||||||||||||||| ||||||||||| ||||||||||    
T  5309576 aaacatatttgcaccacaacactcttcaaccctttcctttactacaacaag 5309626  T

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