View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19837_low_5 (Length: 397)
Name: NF19837_low_5
Description: NF19837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19837_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 18 - 395
Target Start/End: Complemental strand, 4078433 - 4078054
Alignment:
| Q |
18 |
aggtcattgcctagcaaatttatcagagaaaacatagtttttcaacttcaatttcattgtcaatgcaaaacttaactccttccaaaacttaatctaatta |
117 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4078433 |
aggtcattgcctagcaaatttaacagagaaaacatagtttttcaacttcaatttcattgtcaatgcaaaacttaactccttccaaaacttaatctaatta |
4078334 |
T |
|
| Q |
118 |
aaatcataaattatcttgatgtctgcttcgttagggtggccaaaatgaga--aacaacacaccatccttcacattccctcagtttgggaggaattccaag |
215 |
Q |
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||||||||||| ||||||||| |||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4078333 |
aaatcataaataatcttgatgcctgctttattagggtggccaaaatgagacaaacaacacaccatccttcacattccctcagtttgggaggaattccaag |
4078234 |
T |
|
| Q |
216 |
aacttgagatgcaaatgatgcaaagtccatatcctccctagttttttgcagtcgaacaaggcataaatttcatctattatccaatcaatctcacccttgt |
315 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4078233 |
aacttgagatacaaatgatgcaaagtccatatcctccctagttttttggagtcgaacaaggcataaatttcatctattatccaatcaatctcacccttgt |
4078134 |
T |
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| Q |
316 |
tatgttccaccctcacttgtgtgaatatattctatgtgtcaaccattcctaaatcttcttctccactaatcatctctgct |
395 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
4078133 |
tatgtgccaccctcacttgtgtgaatatattctatgtgtcaaccattcctaaatcttcttctccactaatcatcactgct |
4078054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 18 - 358
Target Start/End: Complemental strand, 4101186 - 4100846
Alignment:
| Q |
18 |
aggtcattgcctagcaaatttatcagagaaaacatagtttttcaacttcaatttcattgtcaatgcaaaacttaactccttccaaaacttaatctaatta |
117 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4101186 |
aggtcattgcctagcaaatttaacagagaaaacatagtttttcaacttcaatttcattgtcaatgcaaaacttaactccttccaaaacttaatctaatta |
4101087 |
T |
|
| Q |
118 |
aaatcataaattatcttgatgtctgcttcgttagggtggccaaaatgagaaacaacacaccatccttcacattccctcagtttgggaggaattccaagaa |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4101086 |
aaatcataaattatcttgatgtctgcttcgttagggtggccaaaatgagaaacaacacaccatccttcacattccctcagtttaggaggaattccaagaa |
4100987 |
T |
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| Q |
218 |
cttgagatgcaaatgatgcaaagtccatatcctccctagttttttgcagtcgaacaaggcataaatttcatctattatccaatcaatctcacccttgtta |
317 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4100986 |
cttgagatacaaatgatgcaaagtccatatcctccctagttttttgcagttgaacaaggcataaatttcatctattatccaatcaatctcacccttgtta |
4100887 |
T |
|
| Q |
318 |
tgttccaccctcacttgtgtgaatatattctatgtgtcaac |
358 |
Q |
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||| |||||||||||||||||||||||||||| |||||||| |
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| T |
4100886 |
tgtgccaccctcacttgtgtgaatatattctacgtgtcaac |
4100846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 13825352 - 13825292
Alignment:
| Q |
54 |
gtttttcaacttcaatttcattgtcaatgcaaaactt-aactccttccaaaacttaatcta |
113 |
Q |
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||||||||| || || || ||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
13825352 |
gtttttcaattttaagtttattatcaatgcaaaactttaactccttccaaaacttaatcta |
13825292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 255
Target Start/End: Original strand, 4502620 - 4502677
Alignment:
| Q |
198 |
tttgggaggaattccaagaacttgagatgcaaatgatgcaaagtccatatcctcccta |
255 |
Q |
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|||||||||||||||| |||||| || | ||| |||||| ||||||||||||||||| |
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| T |
4502620 |
tttgggaggaattccatgaactttaggtacaactgatgcggagtccatatcctcccta |
4502677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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