View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19837_low_8 (Length: 237)

Name: NF19837_low_8
Description: NF19837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19837_low_8
NF19837_low_8
[»] chr1 (15 HSPs)
chr1 (1-201)||(23221207-23221407)
chr1 (29-80)||(13794523-13794574)
chr1 (25-76)||(47719118-47719169)
chr1 (24-82)||(1091172-1091230)
chr1 (31-77)||(31060224-31060270)
chr1 (28-81)||(24978238-24978291)
chr1 (1-49)||(11462909-11462957)
chr1 (27-83)||(14983461-14983517)
chr1 (29-69)||(31401668-31401708)
chr1 (5-49)||(34083363-34083407)
chr1 (13-81)||(35473946-35474014)
chr1 (5-49)||(41973281-41973325)
chr1 (5-49)||(45190260-45190304)
chr1 (29-77)||(49875614-49875662)
chr1 (25-77)||(50849084-50849136)
[»] chr7 (13 HSPs)
chr7 (5-69)||(45425459-45425523)
chr7 (5-76)||(27263340-27263411)
chr7 (27-77)||(5317301-5317351)
chr7 (15-77)||(8879748-8879810)
chr7 (24-86)||(34000251-34000313)
chr7 (24-82)||(39926548-39926606)
chr7 (26-70)||(10362316-10362360)
chr7 (28-76)||(38911298-38911346)
chr7 (5-76)||(27270234-27270305)
chr7 (29-75)||(37230043-37230089)
chr7 (5-49)||(9522938-9522982)
chr7 (28-83)||(34807210-34807266)
chr7 (29-81)||(48527184-48527236)
[»] chr6 (15 HSPs)
chr6 (1-83)||(33824873-33824955)
chr6 (24-76)||(4450261-4450313)
chr6 (24-76)||(6470626-6470678)
chr6 (13-77)||(14552335-14552399)
chr6 (14-82)||(31140812-31140880)
chr6 (31-81)||(14169562-14169612)
chr6 (28-77)||(331900-331949)
chr6 (29-70)||(334145-334186)
chr6 (25-82)||(788859-788916)
chr6 (11-76)||(8381191-8381256)
chr6 (24-77)||(8831205-8831258)
chr6 (24-77)||(18256881-18256934)
chr6 (29-77)||(7081669-7081717)
chr6 (5-49)||(26548277-26548321)
chr6 (28-64)||(28046192-28046228)
[»] chr4 (29 HSPs)
chr4 (28-82)||(6520064-6520118)
chr4 (24-86)||(42845014-42845076)
chr4 (28-77)||(39842026-39842075)
chr4 (4-76)||(7371538-7371610)
chr4 (5-49)||(28435239-28435283)
chr4 (29-77)||(48472959-48473007)
chr4 (29-76)||(19124637-19124684)
chr4 (31-74)||(24063225-24063268)
chr4 (29-84)||(29908047-29908102)
chr4 (24-75)||(42756116-42756167)
chr4 (31-77)||(16733536-16733582)
chr4 (26-76)||(24488421-24488471)
chr4 (24-85)||(7230270-7230331)
chr4 (29-70)||(11144680-11144721)
chr4 (25-70)||(12439669-12439714)
chr4 (5-46)||(23304007-23304048)
chr4 (24-69)||(24540849-24540894)
chr4 (29-82)||(36203229-36203282)
chr4 (5-82)||(38453258-38453335)
chr4 (5-82)||(49473638-49473715)
chr4 (25-82)||(51436617-51436674)
chr4 (5-49)||(3936653-3936697)
chr4 (5-69)||(17423168-17423232)
chr4 (29-77)||(27550749-27550797)
chr4 (1-49)||(32923190-32923238)
chr4 (6-85)||(40666844-40666924)
chr4 (29-65)||(43183008-43183044)
chr4 (24-76)||(51298706-51298758)
chr4 (26-70)||(56096209-56096253)
[»] chr2 (14 HSPs)
chr2 (28-81)||(40967385-40967438)
chr2 (24-83)||(5168589-5168648)
chr2 (26-76)||(37320529-37320579)
chr2 (24-82)||(44694681-44694739)
chr2 (5-80)||(25186233-25186308)
chr2 (1-60)||(39090887-39090946)
chr2 (28-82)||(4897536-4897590)
chr2 (28-82)||(4944930-4944984)
chr2 (29-75)||(16204832-16204878)
chr2 (5-83)||(27935048-27935126)
chr2 (5-77)||(2256969-2257041)
chr2 (30-82)||(5676732-5676784)
chr2 (26-81)||(21497661-21497716)
chr2 (26-70)||(26133532-26133576)
[»] chr8 (13 HSPs)
chr8 (5-81)||(3650514-3650590)
chr8 (24-70)||(7679907-7679953)
chr8 (29-77)||(1877677-1877725)
chr8 (5-49)||(20469302-20469346)
chr8 (26-77)||(28084280-28084331)
chr8 (25-83)||(12249496-12249554)
chr8 (28-81)||(22847471-22847524)
chr8 (29-77)||(17062354-17062402)
chr8 (29-77)||(17585956-17586004)
chr8 (5-49)||(20275180-20275224)
chr8 (5-49)||(21061807-21061851)
chr8 (29-81)||(28439953-28440005)
chr8 (13-49)||(32192920-32192956)
[»] chr3 (10 HSPs)
chr3 (5-81)||(52119370-52119446)
chr3 (29-82)||(11574246-11574299)
chr3 (26-82)||(47377361-47377417)
chr3 (28-77)||(2078238-2078287)
chr3 (29-82)||(4216414-4216467)
chr3 (5-49)||(17507690-17507734)
chr3 (5-49)||(29631212-29631256)
chr3 (5-49)||(39779050-39779094)
chr3 (24-76)||(47039426-47039478)
chr3 (24-76)||(47099045-47099097)
[»] chr5 (22 HSPs)
chr5 (5-83)||(18789028-18789106)
chr5 (1-70)||(31159434-31159503)
chr5 (24-69)||(34206233-34206278)
chr5 (29-77)||(8545004-8545052)
chr5 (4-84)||(25603990-25604070)
chr5 (24-76)||(27679497-27679549)
chr5 (32-83)||(31198701-31198752)
chr5 (29-83)||(30893925-30893979)
chr5 (27-81)||(31545865-31545919)
chr5 (5-82)||(6624769-6624846)
chr5 (13-82)||(11637571-11637640)
chr5 (28-77)||(12285616-12285665)
chr5 (24-77)||(18872665-18872718)
chr5 (28-77)||(23118065-23118114)
chr5 (29-82)||(33654741-33654794)
chr5 (29-82)||(40445976-40446029)
chr5 (29-81)||(5974240-5974292)
chr5 (28-76)||(11647196-11647244)
chr5 (5-49)||(16752493-16752537)
chr5 (25-77)||(17230384-17230436)
chr5 (29-77)||(36623189-36623237)
chr5 (29-81)||(41650954-41651006)
[»] scaffold0238 (1 HSPs)
scaffold0238 (5-76)||(25388-25459)
[»] scaffold0070 (1 HSPs)
scaffold0070 (11-70)||(42929-42988)
[»] scaffold0045 (1 HSPs)
scaffold0045 (25-82)||(42211-42268)
[»] scaffold0025 (1 HSPs)
scaffold0025 (1-49)||(64244-64292)


Alignment Details
Target: chr1 (Bit Score: 181; Significance: 6e-98; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 23221207 - 23221407
Alignment:
Q  1 tttttggtggctggggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgacaacaataaaataatttaaa 100  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||| |||||||||    
T  23221207 tttttggtggctggggttcgcagcccgaatcttgcatatattatgcattttctttatcaattgagttaagatcacgacgacaacaataaattaatttaaa 23221306  T
Q  101 cgtgtgtcataaacatatcaataaagaatactcatcttaaaggacaacaataaataatttaaaggattagctcgacaatgtctcttttgtcttttaagga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23221307 cgtgtgtcataaacatatcaataaagaatactcatcttaaaggacaacaataaataatttaaaggattagctcgacaatgtctcttttgtcttttaagga 23221406  T
Q  201 a 201  Q
    |    
T  23221407 a 23221407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 80
Target Start/End: Original strand, 13794523 - 13794574
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaagatcacgatga 80  Q
    ||||||||||||||||||||| || || ||||||||| |||| |||||||||    
T  13794523 accttgcatatattatgcattatccttatcaactgagctaagctcacgatga 13794574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 25 - 76
Target Start/End: Original strand, 47719118 - 47719169
Alignment:
Q  25 ccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacg 76  Q
    ||||||||||||||||||||||||| || ||  ||||||||||||| |||||    
T  47719118 ccgaaccttgcatatattatgcattatccttaccaactgagttaagctcacg 47719169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 1091230 - 1091172
Alignment:
Q  24 cccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgaca 82  Q
    ||||||||||||||| |||||||||| ||| |  ||||||||||||| |||||| ||||    
T  1091230 cccgaaccttgcatacattatgcattgtctataccaactgagttaagctcacgaggaca 1091172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 31060224 - 31060270
Alignment:
Q  31 cttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    ||||||||||||||||||| ||| | |||||||| ||||||||||||    
T  31060224 cttgcatatattatgcattatctctatcaactgaattaagatcacga 31060270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 81
Target Start/End: Complemental strand, 24978291 - 24978238
Alignment:
Q  28 aaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgac 81  Q
    |||||||||||||||||| ||| ||| |  ||||||||||||| ||||||||||    
T  24978291 aaccttgcatatattatgtattatctataccaactgagttaagctcacgatgac 24978238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 11462909 - 11462957
Alignment:
Q  1 tttttggtggctggggttcgcagcccgaaccttgcatatattatgcatt 49  Q
    |||||||||| ||||||||| | |||| ||||||||||| |||||||||    
T  11462909 tttttggtggatggggttcgaaccccggaccttgcatattttatgcatt 11462957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 83
Target Start/End: Original strand, 14983461 - 14983517
Alignment:
Q  27 gaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgacaa 83  Q
    |||||||| |||| |||||||||||| ||  ||||||||||||| ||| ||||||||    
T  14983461 gaaccttgtatattttatgcattttccttaccaactgagttaagctcaagatgacaa 14983517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 69
Target Start/End: Original strand, 31401668 - 31401708
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaa 69  Q
    ||||||||||||||||||||| | ||| |||||||||||||    
T  31401668 accttgcatatattatgcattgtttttgtcaactgagttaa 31401708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 34083407 - 34083363
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcatt 49  Q
    |||||||||||||||| | ||| |||||| |||||||||||||||    
T  34083407 tggtggctggggttcgaaccccaaaccttacatatattatgcatt 34083363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 81
Target Start/End: Complemental strand, 35474014 - 35473946
Alignment:
Q  13 ggggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgac 81  Q
    |||||||| | || ||||||||||||||||||||||| || ||  ||| |||| |||| ||||||||||    
T  35474014 ggggttcgaaccctgaaccttgcatatattatgcattatccttaccaattgagctaagctcacgatgac 35473946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 41973325 - 41973281
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcatt 49  Q
    ||||||| |||||||| | |||| |||||||||||||||||||||    
T  41973325 tggtggccggggttcgaaccccggaccttgcatatattatgcatt 41973281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 45190260 - 45190304
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcatt 49  Q
    |||||||| ||||| | | ||||||||||||||||||||||||||    
T  45190260 tggtggctagggtttgaatcccgaaccttgcatatattatgcatt 45190304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 49875614 - 49875662
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    ||||||||||||||||||||| || ||  ||||||||||||| ||||||    
T  49875614 accttgcatatattatgcattgtccttaccaactgagttaagctcacga 49875662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 50849084 - 50849136
Alignment:
Q  25 ccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    ||||||||| ||||||||||||||| || ||  ||||||||||||| ||||||    
T  50849084 ccgaaccttacatatattatgcattgtcattaccaactgagttaagctcacga 50849136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 69
Target Start/End: Complemental strand, 45425523 - 45425459
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaa 69  Q
    ||||||| ||| |||| | |||||||||||||||||||||||||| ||||| |||||||||||||    
T  45425523 tggtggccgggattcgaaccccgaaccttgcatatattatgcattgtctttatcaactgagttaa 45425459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 27263411 - 27263340
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacg 76  Q
    |||||||||||||||| |  ||||||||||||||||||||||||| ||  |  ||||||||||||| |||||    
T  27263411 tggtggctggggttcgaactccgaaccttgcatatattatgcattgtccataccaactgagttaagttcacg 27263340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 5317301 - 5317351
Alignment:
Q  27 gaaccttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    ||||||||||||||||||||||||||  | |||||||||||||| ||||||    
T  5317301 gaaccttgcatatattatgcattttccatatcaactgagttaagctcacga 5317351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 77
Target Start/End: Original strand, 8879748 - 8879810
Alignment:
Q  15 ggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    |||||| | |||||||||||||||||||||||||| ||| |  ||||||||||||| ||||||    
T  8879748 ggttcgaatcccgaaccttgcatatattatgcattgtctataccaactgagttaagctcacga 8879810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 34000313 - 34000251
Alignment:
Q  24 cccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgacaacaa 86  Q
    |||||||||| ||||||||||||||| || || |||||||||||||| |||||  ||||||||    
T  34000313 cccgaaccttacatatattatgcattatccttatcaactgagttaagctcacggagacaacaa 34000251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 82
Target Start/End: Original strand, 39926548 - 39926606
Alignment:
Q  24 cccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgaca 82  Q
    ||||||| |||||||||||||||||| || || ||||||||| |||| |||||||||||    
T  39926548 cccgaacattgcatatattatgcattgtccttatcaactgagctaagctcacgatgaca 39926606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 10362316 - 10362360
Alignment:
Q  26 cgaaccttgcatatattatgcattttctttctcaactgagttaag 70  Q
    |||||||||||||||||||||||| || || ||||||||||||||    
T  10362316 cgaaccttgcatatattatgcattctccttatcaactgagttaag 10362360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 38911346 - 38911298
Alignment:
Q  28 aaccttgcatatattatgcattttctttctcaactgagttaagatcacg 76  Q
    ||||||||||||||||| |||| ||||| |||||||||||||| |||||    
T  38911346 aaccttgcatatattatacattgtctttatcaactgagttaagctcacg 38911298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 27270305 - 27270234
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacg 76  Q
    ||||||||| |||||| |  ||||||||||||||||||||||||| ||  |  ||||||||||||| |||||    
T  27270305 tggtggctgaggttcgaactccgaaccttgcatatattatgcattgtccataccaactgagttaagttcacg 27270234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 37230043 - 37230089
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaagatcac 75  Q
    |||||||||||||||||||||||| ||  ||||||||||||| ||||    
T  37230043 accttgcatatattatgcattttccttaccaactgagttaagctcac 37230089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 9522982 - 9522938
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcatt 49  Q
    ||||||| |||||||| | ||| ||||||||||||||||||||||    
T  9522982 tggtggccggggttcgaaccccaaaccttgcatatattatgcatt 9522938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 83
Target Start/End: Complemental strand, 34807266 - 34807210
Alignment:
Q  28 aaccttgcatatattatgcatt-ttctttctcaactgagttaagatcacgatgacaa 83  Q
    |||||||||||||||||||||| |||||| ||||||||| |||  |||||| |||||    
T  34807266 aaccttgcatatattatgcattgttctttatcaactgagctaaactcacgaggacaa 34807210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 48527236 - 48527184
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaagatcacgatgac 81  Q
    ||||||||||||||||||||| || || ||||||||| |||| ||||| ||||    
T  48527236 accttgcatatattatgcattgtccttatcaactgagataagctcacggtgac 48527184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 33824955 - 33824873
Alignment:
Q  1 tttttggtggctggggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgacaa 83  Q
    ||||||||||| | |||| | | |||| ||||||||||||||||||||| || || ||||||||| ||||||||||| |||||    
T  33824955 tttttggtggccgaggtttgaaccccggaccttgcatatattatgcattgtccttatcaactgagctaagatcacgaagacaa 33824873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 4450313 - 4450261
Alignment:
Q  24 cccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacg 76  Q
    |||| ||||||||||||||||||||| ||||| ||||||||| |||| |||||    
T  4450313 cccggaccttgcatatattatgcattgtctttatcaactgagctaagctcacg 4450261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 6470626 - 6470678
Alignment:
Q  24 cccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacg 76  Q
    |||||| ||| ||||||||||||||| ||||| |||||||||||||| |||||    
T  6470626 cccgaaacttacatatattatgcattgtctttatcaactgagttaagctcacg 6470678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 13 - 77
Target Start/End: Complemental strand, 14552399 - 14552335
Alignment:
Q  13 ggggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    |||||||| | || |||||||| |||||||||||||| ||| | |||||||||||||| ||||||    
T  14552399 ggggttcgaatcctgaaccttgtatatattatgcattatctctatcaactgagttaagctcacga 14552335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 82
Target Start/End: Original strand, 31140812 - 31140880
Alignment:
Q  14 gggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgaca 82  Q
    ||||||| | || |||||||||||||||||| |||| ||||| ||| |||||||||| |||||| ||||    
T  31140812 gggttcgaatcctgaaccttgcatatattatacattatctttatcagctgagttaagctcacgaggaca 31140880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 14169562 - 14169612
Alignment:
Q  31 cttgcatatattatgcattttctttctcaactgagttaagatcacgatgac 81  Q
    |||||||||||| |||||| || || |||||||||||||| ||||||||||    
T  14169562 cttgcatatattctgcattgtccttatcaactgagttaaggtcacgatgac 14169612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 331900 - 331949
Alignment:
Q  28 aaccttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    |||||||||||||||||||||| ||| |  ||||||||||||| ||||||    
T  331900 aaccttgcatatattatgcattgtctctaccaactgagttaagctcacga 331949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 334186 - 334145
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaag 70  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||    
T  334186 accttgcatatattatgcattgtctttatcaactgagctaag 334145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 788916 - 788859
Alignment:
Q  25 ccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgaca 82  Q
    ||||||||||||||||||||||||| || ||  |||||||| |||| |||||| ||||    
T  788916 ccgaaccttgcatatattatgcattgtccttaccaactgagataagctcacgaggaca 788859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 11 - 76
Target Start/End: Original strand, 8381191 - 8381256
Alignment:
Q  11 ctggggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacg 76  Q
    |||||||||| | || | ||||||||||| ||||||||| |||||  ||||||||||||| |||||    
T  8381191 ctggggttcgaaccctggaccttgcatatgttatgcattgtctttaccaactgagttaagctcacg 8381256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 8831258 - 8831205
Alignment:
Q  24 cccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    |||| |||||||||| |||||||||| || ||  ||||||||||||||||||||    
T  8831258 cccggaccttgcataaattatgcattgtccttaccaactgagttaagatcacga 8831205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 18256934 - 18256881
Alignment:
Q  24 cccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    |||| ||||||||||||||||||||| || || ||||||||| |||| ||||||    
T  18256934 cccggaccttgcatatattatgcattgtccttatcaactgagctaagctcacga 18256881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 7081669 - 7081717
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    ||||||||||||||||| ||| ||||| ||||||||| |||| ||||||    
T  7081669 accttgcatatattatgtattgtctttatcaactgagctaagctcacga 7081717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 26548321 - 26548277
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcatt 49  Q
    |||||||||||||| | | ||||||||||||||||||||| ||||    
T  26548321 tggtggctggggtttgaaccccgaaccttgcatatattatacatt 26548277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 28046192 - 28046228
Alignment:
Q  28 aaccttgcatatattatgcattttctttctcaactga 64  Q
    |||||||||||||||||||||| ||||| ||||||||    
T  28046192 aaccttgcatatattatgcattgtctttatcaactga 28046228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 6520118 - 6520064
Alignment:
Q  28 aaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgaca 82  Q
    |||||||||||||||||||||| |||||   ||||||||||||||||||||||||    
T  6520118 aaccttgcatatattatgcattgtctttactaactgagttaagatcacgatgaca 6520064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 86
Target Start/End: Complemental strand, 42845076 - 42845014
Alignment:
Q  24 cccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgacaacaa 86  Q
    |||| ||||||||||||||||||||| || ||  ||||||||||||| |||||| ||||||||    
T  42845076 cccggaccttgcatatattatgcattgtcctttccaactgagttaagctcacgaggacaacaa 42845014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 39842026 - 39842075
Alignment:
Q  28 aaccttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    |||||| ||||||||||||||| || || |||||||||||||||||||||    
T  39842026 aaccttacatatattatgcattgtccttatcaactgagttaagatcacga 39842075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 76
Target Start/End: Original strand, 7371538 - 7371610
Alignment:
Q  4 ttggtggctggggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacg 76  Q
    |||||| | |||||||| | |||| ||||||||||||||||| ||| || || |||||||||||||| |||||    
T  7371538 ttggtgtccggggttcgaaccccggaccttgcatatattatgtattgtccttatcaactgagttaagctcacg 7371610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 28435239 - 28435283
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcatt 49  Q
    |||||||||||||| | | ||||||||||||||||||||||||||    
T  28435239 tggtggctggggtttgaaccccgaaccttgcatatattatgcatt 28435283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 48473007 - 48472959
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    |||||||| |||||||||||| ||||| |||||||||||||| ||||||    
T  48473007 accttgcaaatattatgcattatctttatcaactgagttaagttcacga 48472959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 19124637 - 19124684
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaagatcacg 76  Q
    ||||||||||||||||| ||| ||||| |||||||||||||| |||||    
T  19124637 accttgcatatattatgtattgtctttatcaactgagttaagctcacg 19124684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 24063225 - 24063268
Alignment:
Q  31 cttgcatatattatgcattttctttctcaactgagttaagatca 74  Q
    ||||||||||||||||||| ||| | ||||||||||||||||||    
T  24063225 cttgcatatattatgcattgtctctatcaactgagttaagatca 24063268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 29908102 - 29908047
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaagatcacgatgacaac 84  Q
    ||||||||||||||||||||| || ||  ||||||||||||| |||||| ||||||    
T  29908102 accttgcatatattatgcattgtccttaccaactgagttaagctcacgaagacaac 29908047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 24 - 75
Target Start/End: Original strand, 42756116 - 42756167
Alignment:
Q  24 cccgaaccttgcatatattatgcattttctttctcaactgagttaagatcac 75  Q
    |||||||||||||||||||||||||| || || ||||||||| |||| ||||    
T  42756116 cccgaaccttgcatatattatgcattgtccttatcaactgagctaagttcac 42756167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 31 - 77
Target Start/End: Original strand, 16733536 - 16733582
Alignment:
Q  31 cttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    |||||||||||||| |||| ||||| |||||||||||||| ||||||    
T  16733536 cttgcatatattatacattatctttatcaactgagttaagctcacga 16733582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 24488471 - 24488421
Alignment:
Q  26 cgaaccttgcatatattatgcattttctttctcaactgagttaagatcacg 76  Q
    ||||||||| |||||||||||||| || ||  |||||||||||||||||||    
T  24488471 cgaaccttgtatatattatgcattgtcattaccaactgagttaagatcacg 24488421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 7230331 - 7230270
Alignment:
Q  24 cccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgacaaca 85  Q
    |||| ||||||||||||||||||||| || ||  |||||||| |||| |||||| |||||||    
T  7230331 cccggaccttgcatatattatgcattgtccttaccaactgagctaagctcacgaggacaaca 7230270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 11144680 - 11144721
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaag 70  Q
    ||||||||||||||||||||| ||||| ||||||||| ||||    
T  11144680 accttgcatatattatgcattgtctttatcaactgaggtaag 11144721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 70
Target Start/End: Complemental strand, 12439714 - 12439669
Alignment:
Q  25 ccgaaccttgcatatattatgcattttctttctcaactgagttaag 70  Q
    ||||||||||||||||||||||||| || || ||||||||| ||||    
T  12439714 ccgaaccttgcatatattatgcattgtccttatcaactgagctaag 12439669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 46
Target Start/End: Original strand, 23304007 - 23304048
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgc 46  Q
    ||||||| |||||||||| |||| ||||||||||||||||||    
T  23304007 tggtggccggggttcgcaccccggaccttgcatatattatgc 23304048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 24540894 - 24540849
Alignment:
Q  24 cccgaaccttgcatatattatgcattttctttctcaactgagttaa 69  Q
    ||||| |||||||||||||||||||| ||| | |||||||||||||    
T  24540894 cccgacccttgcatatattatgcattgtctctatcaactgagttaa 24540849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 36203282 - 36203229
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaagatcacgatgaca 82  Q
    ||||||||||||||||||||| || || ||||||||| |||| |||||| ||||    
T  36203282 accttgcatatattatgcattgtccttatcaactgagctaagctcacgaggaca 36203229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 38453335 - 38453258
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgaca 82  Q
    |||||||||||||||| | || | ||||||||||||||||||||| ||  |  |||||||| |||| |||||| ||||    
T  38453335 tggtggctggggttcgaaccctggaccttgcatatattatgcattgtccatgccaactgagctaagctcacgaggaca 38453258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 49473715 - 49473638
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgaca 82  Q
    ||||| |||||||||| | |||| ||||||||||||||||||||| || ||  |||||| | |||| |||||| ||||    
T  49473715 tggtgactggggttcgaaccccggaccttgcatatattatgcattgtccttaccaactgggctaagctcacgaggaca 49473638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 82
Target Start/End: Original strand, 51436617 - 51436674
Alignment:
Q  25 ccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgaca 82  Q
    ||||||||||||||||||||||||| |   | |||||||||||||| |||||| ||||    
T  51436617 ccgaaccttgcatatattatgcattgttcgtatcaactgagttaagttcacgaggaca 51436674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 3936697 - 3936653
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcatt 49  Q
    ||||||| |||||||| | |||| |||||||||||||||||||||    
T  3936697 tggtggccggggttcgaaccccggaccttgcatatattatgcatt 3936653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 69
Target Start/End: Original strand, 17423168 - 17423232
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaa 69  Q
    |||||||||| ||| | | |||| ||||||||||||||||||||| ||| |  ||||||||||||    
T  17423168 tggtggctggagtttgaaccccggaccttgcatatattatgcattgtctctaccaactgagttaa 17423232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 27550749 - 27550797
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    ||||||||||||||||||||| | | | |||||||||||||| ||||||    
T  27550749 accttgcatatattatgcattatttctttcaactgagttaagctcacga 27550797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 32923190 - 32923238
Alignment:
Q  1 tttttggtggctggggttcgcagcccgaaccttgcatatattatgcatt 49  Q
    ||||| |||||||||||| | | |||||||||| |||||||||||||||    
T  32923190 ttttttgtggctggggtttgaaccccgaaccttacatatattatgcatt 32923238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 85
Target Start/End: Original strand, 40666844 - 40666924
Alignment:
Q  6 ggtggctggggttcgcagcccgaaccttgcatatattatgcattt-tctttctcaactgagttaagatcacgatgacaaca 85  Q
    |||| |||||||||| |  |||| || |||||||| ||||||||| ||||| |||||||||||||| |||||  |||||||    
T  40666844 ggtgtctggggttcgaactccgacccctgcatataatatgcatttgtctttgtcaactgagttaagctcacggggacaaca 40666924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 43183008 - 43183044
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgag 65  Q
    ||||||||||||||||||||| ||||| |||||||||    
T  43183008 accttgcatatattatgcattgtctttatcaactgag 43183044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 51298706 - 51298758
Alignment:
Q  24 cccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacg 76  Q
    |||||||||||||||||||||  ||| || || |||||||||||||| |||||    
T  51298706 cccgaaccttgcatatattatatattgtccttatcaactgagttaagttcacg 51298758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Complemental strand, 56096253 - 56096209
Alignment:
Q  26 cgaaccttgcatatattatgcattttctttctcaactgagttaag 70  Q
    |||||||| ||||||||||||||| || || ||||||||||||||    
T  56096253 cgaaccttacatatattatgcattgtccttatcaactgagttaag 56096209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 40967385 - 40967438
Alignment:
Q  28 aaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgac 81  Q
    |||||||||||||||||||||| || || |||||||||||||| ||||||||||    
T  40967385 aaccttgcatatattatgcattgtccttatcaactgagttaagctcacgatgac 40967438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 24 - 83
Target Start/End: Original strand, 5168589 - 5168648
Alignment:
Q  24 cccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgacaa 83  Q
    |||||||||||||||||||||||||| ||  | |||||||||||||| ||| ||||||||    
T  5168589 cccgaaccttgcatatattatgcattatccctatcaactgagttaagctcatgatgacaa 5168648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 37320529 - 37320579
Alignment:
Q  26 cgaaccttgcatatattatgcattttctttctcaactgagttaagatcacg 76  Q
    |||||||||||||||||||||||| |||||  ||||||||||||| |||||    
T  37320529 cgaaccttgcatatattatgcattgtctttaccaactgagttaagctcacg 37320579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 82
Target Start/End: Complemental strand, 44694739 - 44694681
Alignment:
Q  24 cccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgaca 82  Q
    ||||| |||||||||||||||||||| ||| | |||||||||||||| |||||| ||||    
T  44694739 cccgagccttgcatatattatgcattgtctatatcaactgagttaagttcacgaggaca 44694681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 25186233 - 25186308
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatga 80  Q
    |||||||||||||| | | |||| ||||||||||||||||||||| ||  | ||||||||| |||  |||||||||    
T  25186233 tggtggctggggtttgaaccccggaccttgcatatattatgcattgtccatatcaactgagctaaactcacgatga 25186308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 39090946 - 39090887
Alignment:
Q  1 tttttggtggctggggttcgcagcccgaaccttgcatatattatgcattttctttctcaa 60  Q
    ||||| |||| ||||||||| | ||||||| |||||||||||||||||| ||||| ||||    
T  39090946 ttttttgtggatggggttcgaatcccgaactttgcatatattatgcattgtctttatcaa 39090887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 4897590 - 4897536
Alignment:
Q  28 aaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgaca 82  Q
    |||||||||||||||||||||| || ||  ||||||||||||| |||| ||||||    
T  4897590 aaccttgcatatattatgcattgtccttaccaactgagttaagctcacaatgaca 4897536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 82
Target Start/End: Complemental strand, 4944984 - 4944930
Alignment:
Q  28 aaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgaca 82  Q
    |||||||||||||||||||||| || ||  ||||||||||||| |||| ||||||    
T  4944984 aaccttgcatatattatgcattgtccttaccaactgagttaagctcacaatgaca 4944930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 75
Target Start/End: Original strand, 16204832 - 16204878
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaagatcac 75  Q
    ||||||||||||||||||||| || || |||||||||||||| ||||    
T  16204832 accttgcatatattatgcattgtccttatcaactgagttaagctcac 16204878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 27935126 - 27935048
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgacaa 83  Q
    |||||||||||||||| | | || |||||||||||||| |||||| ||  |  ||||||||||||  ||||||||||||    
T  27935126 tggtggctggggttcgaacctcgtaccttgcatatattctgcattgtccctaccaactgagttaaactcacgatgacaa 27935048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 77
Target Start/End: Complemental strand, 2257041 - 2256969
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    ||||||| |||||||| | |||  ||||||||||||||||||||| ||  |  ||||||||||||| ||||||    
T  2257041 tggtggccggggttcgaaccccagaccttgcatatattatgcattgtccataccaactgagttaagctcacga 2256969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Complemental strand, 5676784 - 5676732
Alignment:
Q  30 ccttgcatatattatgcattttctttctcaactgagttaagatcacgatgaca 82  Q
    |||||||||||||||||||| || ||  ||||||||||||| |||||| ||||    
T  5676784 ccttgcatatattatgcattgtcattaccaactgagttaagctcacgaggaca 5676732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 81
Target Start/End: Complemental strand, 21497716 - 21497661
Alignment:
Q  26 cgaaccttgcatatattatgcatt-ttctttctcaactgagttaagatcacgatgac 81  Q
    |||||||||||||||||||||||| ||||| | |||| |||||||| ||||||||||    
T  21497716 cgaaccttgcatatattatgcattgttcttac-caaccgagttaagctcacgatgac 21497661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 70
Target Start/End: Original strand, 26133532 - 26133576
Alignment:
Q  26 cgaaccttgcatatattatgcattttctttctcaactgagttaag 70  Q
    |||||||||||||||||||||||| || ||  |||||||||||||    
T  26133532 cgaaccttgcatatattatgcattgtccttaccaactgagttaag 26133576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 3650590 - 3650514
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgac 81  Q
    ||||||| |||||| | | |||||||||| ||||||||||||||||| | |  ||||||||||||| ||||||||||    
T  3650590 tggtggccggggtttgaaccccgaaccttacatatattatgcattttttctaccaactgagttaagctcacgatgac 3650514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 70
Target Start/End: Complemental strand, 7679953 - 7679907
Alignment:
Q  24 cccgaaccttgcatatattatgcattttctttctcaactgagttaag 70  Q
    |||||||||||||||||||||||||| |||||  |||||||||||||    
T  7679953 cccgaaccttgcatatattatgcattgtctttgccaactgagttaag 7679907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 1877677 - 1877725
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    ||||||||||||||||||||| ||| | |||||||||||||| ||||||    
T  1877677 accttgcatatattatgcattgtctatatcaactgagttaagctcacga 1877725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 20469302 - 20469346
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcatt 49  Q
    |||||||||||||||| |  |||||||||||||||||||||||||    
T  20469302 tggtggctggggttcgaactccgaaccttgcatatattatgcatt 20469346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 26 - 77
Target Start/End: Complemental strand, 28084331 - 28084280
Alignment:
Q  26 cgaaccttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    ||||||||||||||||||| |||| ||| | |||||||||||||| ||||||    
T  28084331 cgaaccttgcatatattattcattgtctctatcaactgagttaagctcacga 28084280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 12249496 - 12249554
Alignment:
Q  25 ccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgacaa 83  Q
    |||||||||||||||||||| |||| |||||  ||| ||||||||| |||||| |||||    
T  12249496 ccgaaccttgcatatattatacattatctttaccaattgagttaagctcacgaagacaa 12249554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 22847471 - 22847524
Alignment:
Q  28 aaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgac 81  Q
    |||||||||||||||| |||||||| ||  |||||||| |||| ||||||||||    
T  22847471 aaccttgcatatattacgcattttccttaccaactgagctaagctcacgatgac 22847524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 17062354 - 17062402
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    ||||||||||||||||| ||| ||| | |||||||||||||| ||||||    
T  17062354 accttgcatatattatgtattgtctatatcaactgagttaagctcacga 17062402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 17586004 - 17585956
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    ||||||||||||||||| ||| ||| | |||||||||||||| ||||||    
T  17586004 accttgcatatattatgtattgtctatatcaactgagttaagctcacga 17585956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 20275180 - 20275224
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcatt 49  Q
    |||||||||||||| | | |||||||||||||| |||||||||||    
T  20275180 tggtggctggggtttgaaccccgaaccttgcatgtattatgcatt 20275224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 21061807 - 21061851
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcatt 49  Q
    |||||||||||||| | | |||||||||||||| |||||||||||    
T  21061807 tggtggctggggtttgaaccccgaaccttgcatgtattatgcatt 21061851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 28440005 - 28439953
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaagatcacgatgac 81  Q
    ||||| ||||||||||||||| ||||| |||||||| ||||  ||||||||||    
T  28440005 accttacatatattatgcattatctttatcaactgaattaaactcacgatgac 28439953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 49
Target Start/End: Complemental strand, 32192956 - 32192920
Alignment:
Q  13 ggggttcgcagcccgaaccttgcatatattatgcatt 49  Q
    |||||||| | ||||||||||||||||||||||||||    
T  32192956 ggggttcgaaccccgaaccttgcatatattatgcatt 32192920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 52119446 - 52119370
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgac 81  Q
    ||||||| |||||||| | |||||||||||||||||||||||||| || ||  |||||||| |||| ||| ||||||    
T  52119446 tggtggccggggttcgaaccccgaaccttgcatatattatgcattgtccttaccaactgagctaagctcaagatgac 52119370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 11574299 - 11574246
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaagatcacgatgaca 82  Q
    |||||| |||||||||||||| || || |||||||||||||| |||||||||||    
T  11574299 accttgtatatattatgcattatccttatcaactgagttaagctcacgatgaca 11574246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 82
Target Start/End: Original strand, 47377361 - 47377417
Alignment:
Q  26 cgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgaca 82  Q
    ||||||||| |||||||||||||| || ||  ||||||||||||| |||||||||||    
T  47377361 cgaaccttgtatatattatgcattgtccttaccaactgagttaagctcacgatgaca 47377417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 2078287 - 2078238
Alignment:
Q  28 aaccttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    |||||||||||||||||||||| ||| |  ||||||||||||| ||||||    
T  2078287 aaccttgcatatattatgcattgtctctaccaactgagttaagttcacga 2078238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 4216414 - 4216467
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaagatcacgatgaca 82  Q
    ||||||||||||||||||||| || || ||||||||| |||| |||||| ||||    
T  4216414 accttgcatatattatgcattgtccttatcaactgagctaagttcacgaggaca 4216467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 17507690 - 17507734
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcatt 49  Q
    |||||||  ||||||| | ||||||||||||||||||||||||||    
T  17507690 tggtggcccgggttcgaatcccgaaccttgcatatattatgcatt 17507734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 29631256 - 29631212
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcatt 49  Q
    ||||||| |||||| | | ||||||||||||||||||||||||||    
T  29631256 tggtggccggggtttgaatcccgaaccttgcatatattatgcatt 29631212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Complemental strand, 39779094 - 39779050
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcatt 49  Q
    |||||| ||||||| | | ||||||||||||||||||||||||||    
T  39779094 tggtggttggggtttgaaccccgaaccttgcatatattatgcatt 39779050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 47039478 - 47039426
Alignment:
Q  24 cccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacg 76  Q
    ||||||| |||||||||||||||||| || || ||| |||||||||| |||||    
T  47039478 cccgaactttgcatatattatgcattgtccttatcatctgagttaagctcacg 47039426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 47099045 - 47099097
Alignment:
Q  24 cccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacg 76  Q
    |||||||||||||||||||||||||| |  || ||||||||| |||| |||||    
T  47099045 cccgaaccttgcatatattatgcattattcttatcaactgagctaagctcacg 47099097  T

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Target: chr5 (Bit Score: 35; Significance: 0.00000000008; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 5 - 83
Target Start/End: Complemental strand, 18789106 - 18789028
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgacaa 83  Q
    |||||||||||||| | | |||||||||||||||| ||||||||| ||| |  |||||||| ||| ||||||| |||||    
T  18789106 tggtggctggggtttgaaccccgaaccttgcatattttatgcattgtctctaccaactgagctaatatcacgaggacaa 18789028  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 31159503 - 31159434
Alignment:
Q  1 tttttggtggctggggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaag 70  Q
    ||||||||| | |||||||| | || ||| ||||||||||||||| ||| ||||| ||||||||||||||    
T  31159503 tttttggtgtccggggttcgaaccctgaatcttgcatatattatgtattgtctttatcaactgagttaag 31159434  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 34206278 - 34206233
Alignment:
Q  24 cccgaaccttgcatatattatgcattttctttctcaactgagttaa 69  Q
    |||||||||||||||||||||||||| |||||  ||||||||||||    
T  34206278 cccgaaccttgcatatattatgcattgtctttaccaactgagttaa 34206233  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 8545004 - 8545052
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    ||||||||||||||||||||| || || |||||||||||||| ||||||    
T  8545004 accttgcatatattatgcattgtccttatcaactgagttaagctcacga 8545052  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 4 - 84
Target Start/End: Original strand, 25603990 - 25604070
Alignment:
Q  4 ttggtggctggggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgacaac 84  Q
    |||||||| ||| |||| | |||||||||||||||||||||||| | ||  | ||||||||| |||| ||||| |||||||    
T  25603990 ttggtggccgggattcgaaccccgaaccttgcatatattatgcactgtccatatcaactgagctaagctcacggtgacaac 25604070  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 27679549 - 27679497
Alignment:
Q  24 cccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacg 76  Q
    |||||||||||||||||||||||||| |||||  |||||||| |||| |||||    
T  27679549 cccgaaccttgcatatattatgcattatctttaccaactgagctaagctcacg 27679497  T

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Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 83
Target Start/End: Complemental strand, 31198752 - 31198701
Alignment:
Q  32 ttgcatatattatgcattttctttctcaactgagttaagatcacgatgacaa 83  Q
    |||||||||||||||||| || ||  |||||||||||||||||||| |||||    
T  31198752 ttgcatatattatgcattatccttaccaactgagttaagatcacgaggacaa 31198701  T

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Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 83
Target Start/End: Complemental strand, 30893979 - 30893925
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaagatcacgatgacaa 83  Q
    ||||||||||||||||||||| |||||   |||||||||||| |||||| |||||    
T  30893979 accttgcatatattatgcattgtctttacaaactgagttaagctcacgaggacaa 30893925  T

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Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 31545919 - 31545865
Alignment:
Q  27 gaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgac 81  Q
    ||||||||||||||||||||||| || |   ||||||||||||| ||||||||||    
T  31545919 gaaccttgcatatattatgcattatcctaaccaactgagttaagctcacgatgac 31545865  T

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Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 5 - 82
Target Start/End: Complemental strand, 6624846 - 6624769
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgaca 82  Q
    ||||||| |||||||| | |||| ||||||||||||||||||||| ||  |  |||||||| |||| |||||| ||||    
T  6624846 tggtggccggggttcgaaccccggaccttgcatatattatgcattgtccatgccaactgagctaagctcacgaggaca 6624769  T

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Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 13 - 82
Target Start/End: Original strand, 11637571 - 11637640
Alignment:
Q  13 ggggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgaca 82  Q
    |||||||| | |||||||||||||||| ||||||||| ||  |  ||||||||||||| |||||| ||||    
T  11637571 ggggttcgaaccccgaaccttgcatattttatgcattgtccataccaactgagttaagctcacgaggaca 11637640  T

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Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 12285616 - 12285665
Alignment:
Q  28 aaccttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    |||||||||||||||||  ||| ||||| |||||||||||||| ||||||    
T  12285616 aaccttgcatatattatatattgtctttatcaactgagttaagttcacga 12285665  T

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Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 24 - 77
Target Start/End: Complemental strand, 18872718 - 18872665
Alignment:
Q  24 cccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    |||||||||||||||||||||||||||||  |  ||| ||||||||| ||||||    
T  18872718 cccgaaccttgcatatattatgcattttccataacaagtgagttaagctcacga 18872665  T

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Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 28 - 77
Target Start/End: Original strand, 23118065 - 23118114
Alignment:
Q  28 aaccttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    |||||| ||||||||||||||| || || |||||||||||||| ||||||    
T  23118065 aaccttacatatattatgcattgtccttatcaactgagttaagctcacga 23118114  T

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Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 33654794 - 33654741
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaagatcacgatgaca 82  Q
    ||||||||||||||||||||| ||  |  ||||||||||||| |||||||||||    
T  33654794 accttgcatatattatgcattgtccctaccaactgagttaagctcacgatgaca 33654741  T

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Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 40446029 - 40445976
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaagatcacgatgaca 82  Q
    ||||||||||||||||||||| || || |||||||||||||  |||||| ||||    
T  40446029 accttgcatatattatgcattgtccttatcaactgagttaaactcacgaggaca 40445976  T

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Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 5974240 - 5974292
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaagatcacgatgac 81  Q
    ||||||||||||||||||||| ||  | || ||||||||||| ||||||||||    
T  5974240 accttgcatatattatgcattatccctatcgactgagttaagttcacgatgac 5974292  T

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Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Complemental strand, 11647244 - 11647196
Alignment:
Q  28 aaccttgcatatattatgcattttctttctcaactgagttaagatcacg 76  Q
    |||||||||||||||||||||| || ||  ||||||||||||| |||||    
T  11647244 aaccttgcatatattatgcattgtccttaccaactgagttaagttcacg 11647196  T

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Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 49
Target Start/End: Original strand, 16752493 - 16752537
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcatt 49  Q
    ||||||||||| |||| | |||||| |||||||||||||||||||    
T  16752493 tggtggctgggattcgaaccccgaatcttgcatatattatgcatt 16752537  T

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Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 77
Target Start/End: Complemental strand, 17230436 - 17230384
Alignment:
Q  25 ccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    ||||| ||| ||||||||||||||| ||| | ||||||||| |||||||||||    
T  17230436 ccgaatcttacatatattatgcattgtctctgtcaactgagctaagatcacga 17230384  T

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Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 77
Target Start/End: Original strand, 36623189 - 36623237
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaagatcacga 77  Q
    ||||||||||||||||||||| |  || |||||||||||||| ||||||    
T  36623189 accttgcatatattatgcattattcttatcaactgagttaagctcacga 36623237  T

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Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 41650954 - 41651006
Alignment:
Q  29 accttgcatatattatgcattttctttctcaactgagttaagatcacgatgac 81  Q
    ||||||||||||||||||||| ||  |  ||||||||||||| ||||||||||    
T  41650954 accttgcatatattatgcattgtccataccaactgagttaagctcacgatgac 41651006  T

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Target: scaffold0238 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0238
Description:

Target: scaffold0238; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 25459 - 25388
Alignment:
Q  5 tggtggctggggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacg 76  Q
    ||||| |||||||||| | || | ||||||||||||||||||||| || ||  ||||||||||||| |||||    
T  25459 tggtgtctggggttcgaaccctggaccttgcatatattatgcattgtccttaccaactgagttaagctcacg 25388  T

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Target: scaffold0070 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 70
Target Start/End: Original strand, 42929 - 42988
Alignment:
Q  11 ctggggttcgcagcccgaaccttgcatatattatgcattttctttctcaactgagttaag 70  Q
    ||||| |||| | |||||||||||||||||||||||||| |  || ||||||||||||||    
T  42929 ctgggattcgaatcccgaaccttgcatatattatgcattattcttatcaactgagttaag 42988  T

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Target: scaffold0045 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 25 - 82
Target Start/End: Complemental strand, 42268 - 42211
Alignment:
Q  25 ccgaaccttgcatatattatgcattttctttctcaactgagttaagatcacgatgaca 82  Q
    |||||||||||||||||||| |||| ||| | |||||| | ||||| |||||||||||    
T  42268 ccgaaccttgcatatattatacattatctctatcaactaaattaagttcacgatgaca 42211  T

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Target: scaffold0025 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 64292 - 64244
Alignment:
Q  1 tttttggtggctggggttcgcagcccgaaccttgcatatattatgcatt 49  Q
    ||||||||||  |||||||| | |||| |||||||||||||||||||||    
T  64292 tttttggtggtcggggttcgaatcccggaccttgcatatattatgcatt 64244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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