View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19837_low_9 (Length: 234)

Name: NF19837_low_9
Description: NF19837
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19837_low_9
NF19837_low_9
[»] chr2 (31 HSPs)
chr2 (71-200)||(28526876-28527005)
chr2 (71-214)||(5212024-5212168)
chr2 (75-214)||(3100294-3100437)
chr2 (71-214)||(28572106-28572249)
chr2 (15-72)||(28527200-28527257)
chr2 (82-215)||(7213369-7213505)
chr2 (71-152)||(15859408-15859489)
chr2 (87-214)||(40964948-40965077)
chr2 (93-200)||(7650063-7650171)
chr2 (87-214)||(33751356-33751486)
chr2 (87-166)||(41436025-41436104)
chr2 (71-166)||(42881343-42881438)
chr2 (86-152)||(9724841-9724906)
chr2 (87-214)||(30757650-30757779)
chr2 (71-214)||(31348406-31348552)
chr2 (71-165)||(33880106-33880199)
chr2 (71-175)||(10818557-10818662)
chr2 (71-139)||(34235022-34235090)
chr2 (87-139)||(37028731-37028783)
chr2 (82-152)||(7931573-7931643)
chr2 (87-172)||(18181295-18181381)
chr2 (94-144)||(28925937-28925987)
chr2 (94-152)||(36103539-36103597)
chr2 (87-202)||(43077808-43077926)
chr2 (87-144)||(8550724-8550780)
chr2 (71-152)||(37529137-37529218)
chr2 (89-144)||(8031709-8031764)
chr2 (72-152)||(24356071-24356151)
chr2 (87-166)||(28108457-28108537)
chr2 (87-167)||(43950521-43950600)
chr2 (95-167)||(44194597-44194668)
[»] chr7 (34 HSPs)
chr7 (71-214)||(7425944-7426089)
chr7 (71-166)||(38181940-38182035)
chr7 (71-212)||(46288497-46288640)
chr7 (71-214)||(12308275-12308419)
chr7 (71-180)||(11616493-11616602)
chr7 (87-216)||(30462909-30463041)
chr7 (87-180)||(31581525-31581618)
chr7 (87-214)||(33584457-33584588)
chr7 (87-214)||(2846758-2846888)
chr7 (87-166)||(34963893-34963972)
chr7 (87-214)||(39498569-39498699)
chr7 (81-215)||(33774119-33774254)
chr7 (71-152)||(30659546-30659627)
chr7 (71-152)||(37264273-37264354)
chr7 (89-166)||(40590909-40590986)
chr7 (89-180)||(23703847-23703939)
chr7 (87-175)||(45890919-45891006)
chr7 (122-214)||(48981274-48981369)
chr7 (87-214)||(29257442-29257572)
chr7 (94-215)||(37157062-37157188)
chr7 (87-215)||(2842134-2842259)
chr7 (87-180)||(29434662-29434755)
chr7 (89-166)||(46095532-46095609)
chr7 (87-152)||(47453964-47454029)
chr7 (86-144)||(23111611-23111669)
chr7 (97-167)||(27242822-27242892)
chr7 (94-180)||(39693723-39693809)
chr7 (87-165)||(40038193-40038270)
chr7 (71-152)||(5724773-5724854)
chr7 (86-135)||(9602838-9602887)
chr7 (86-135)||(9830409-9830458)
chr7 (71-135)||(32775960-32776024)
chr7 (71-135)||(38589711-38589775)
chr7 (81-153)||(41059357-41059429)
[»] chr5 (27 HSPs)
chr5 (71-214)||(42575705-42575851)
chr5 (71-214)||(22582938-22583085)
chr5 (71-214)||(35646156-35646303)
chr5 (71-214)||(39008025-39008169)
chr5 (71-167)||(4412328-4412424)
chr5 (71-214)||(8369763-8369910)
chr5 (87-214)||(3725082-3725211)
chr5 (87-201)||(858246-858360)
chr5 (91-180)||(25814296-25814385)
chr5 (106-211)||(7276282-7276389)
chr5 (75-166)||(8692889-8692980)
chr5 (87-166)||(11099560-11099639)
chr5 (87-214)||(33012249-33012379)
chr5 (86-214)||(4044559-4044690)
chr5 (71-180)||(13135685-13135794)
chr5 (87-202)||(15814570-15814686)
chr5 (87-215)||(6610729-6610862)
chr5 (89-166)||(7613653-7613730)
chr5 (87-167)||(17243037-17243116)
chr5 (87-167)||(20189837-20189917)
chr5 (87-166)||(13716956-13717035)
chr5 (87-166)||(14259613-14259692)
chr5 (86-153)||(42818863-42818930)
chr5 (71-152)||(4194600-4194681)
chr5 (72-113)||(43525477-43525518)
chr5 (71-175)||(5357884-5357988)
chr5 (87-214)||(16283670-16283797)
[»] chr6 (15 HSPs)
chr6 (71-214)||(3604666-3604812)
chr6 (71-202)||(15081331-15081464)
chr6 (71-175)||(4238359-4238462)
chr6 (71-166)||(31265726-31265820)
chr6 (87-172)||(30064031-30064116)
chr6 (71-135)||(26356247-26356310)
chr6 (71-137)||(9354509-9354575)
chr6 (82-152)||(34803784-34803854)
chr6 (87-152)||(15321307-15321372)
chr6 (71-135)||(33921535-33921599)
chr6 (87-214)||(33109268-33109398)
chr6 (71-153)||(15371929-15372011)
chr6 (87-152)||(7301162-7301227)
chr6 (87-152)||(9755229-9755293)
chr6 (122-170)||(20383781-20383829)
[»] chr8 (23 HSPs)
chr8 (87-215)||(38252520-38252651)
chr8 (73-180)||(32241492-32241599)
chr8 (71-166)||(33190975-33191070)
chr8 (87-214)||(5391943-5392074)
chr8 (73-214)||(2119611-2119755)
chr8 (87-166)||(29615744-29615823)
chr8 (87-166)||(39171489-39171568)
chr8 (71-135)||(33925150-33925214)
chr8 (71-132)||(28791288-28791349)
chr8 (87-214)||(44615447-44615578)
chr8 (86-214)||(44790503-44790634)
chr8 (81-166)||(31132675-31132761)
chr8 (71-152)||(14689920-14690001)
chr8 (87-167)||(31410690-31410770)
chr8 (71-152)||(41726481-41726562)
chr8 (87-214)||(32967359-32967489)
chr8 (71-166)||(34287145-34287240)
chr8 (86-152)||(36012053-36012119)
chr8 (87-202)||(5962555-5962676)
chr8 (71-152)||(32231786-32231867)
chr8 (120-214)||(138929-139025)
chr8 (87-166)||(2349296-2349375)
chr8 (87-135)||(33746301-33746348)
[»] chr4 (44 HSPs)
chr4 (71-166)||(18849825-18849920)
chr4 (71-166)||(44020828-44020923)
chr4 (89-214)||(48740416-48740543)
chr4 (87-166)||(54729565-54729644)
chr4 (76-166)||(31862740-31862830)
chr4 (71-213)||(42024267-42024412)
chr4 (87-200)||(29644266-29644380)
chr4 (87-167)||(1825330-1825410)
chr4 (87-167)||(39979725-39979805)
chr4 (89-196)||(41203652-41203760)
chr4 (89-211)||(42544108-42544232)
chr4 (87-166)||(49812175-49812254)
chr4 (87-180)||(8294963-8295056)
chr4 (71-132)||(25149431-25149492)
chr4 (86-166)||(35998198-35998279)
chr4 (87-135)||(38976968-38977016)
chr4 (72-152)||(42670437-42670517)
chr4 (88-167)||(43335106-43335185)
chr4 (87-162)||(22496759-22496834)
chr4 (87-214)||(41710226-41710356)
chr4 (87-167)||(49448784-49448866)
chr4 (82-132)||(4354428-4354478)
chr4 (96-202)||(34020943-34021051)
chr4 (87-152)||(41436441-41436506)
chr4 (87-167)||(3685956-3686036)
chr4 (86-214)||(39052982-39053114)
chr4 (87-214)||(39976472-39976603)
chr4 (71-151)||(42132774-42132854)
chr4 (87-166)||(40881275-40881354)
chr4 (71-113)||(1796308-1796350)
chr4 (71-113)||(10099791-10099833)
chr4 (71-113)||(29550793-29550835)
chr4 (87-172)||(32559103-32559188)
chr4 (93-202)||(33047406-33047514)
chr4 (92-203)||(34791039-34791152)
chr4 (87-152)||(17237003-17237068)
chr4 (88-152)||(26185148-26185213)
chr4 (87-152)||(38319871-38319936)
chr4 (87-132)||(42185878-42185923)
chr4 (87-144)||(47787929-47787986)
chr4 (71-132)||(49306567-49306628)
chr4 (86-150)||(22129152-22129216)
chr4 (87-139)||(25581382-25581434)
chr4 (72-152)||(37315989-37316069)
[»] chr3 (36 HSPs)
chr3 (71-165)||(21296569-21296663)
chr3 (87-214)||(33994553-33994682)
chr3 (71-180)||(54122290-54122398)
chr3 (87-214)||(38600888-38601017)
chr3 (87-214)||(39365099-39365229)
chr3 (87-166)||(46786063-46786142)
chr3 (71-214)||(51164844-51164993)
chr3 (87-180)||(41031504-41031597)
chr3 (71-152)||(53050986-53051067)
chr3 (71-214)||(1334847-1334987)
chr3 (71-118)||(43639582-43639629)
chr3 (87-166)||(54493855-54493933)
chr3 (87-202)||(48744133-48744250)
chr3 (71-170)||(54845582-54845683)
chr3 (87-214)||(32023183-32023312)
chr3 (71-152)||(54021524-54021604)
chr3 (87-172)||(8706088-8706173)
chr3 (87-172)||(9057975-9058060)
chr3 (71-215)||(21585476-21585623)
chr3 (87-166)||(15280551-15280630)
chr3 (87-214)||(30261584-30261714)
chr3 (96-175)||(49003208-49003286)
chr3 (96-202)||(54458400-54458507)
chr3 (82-132)||(32977867-32977917)
chr3 (86-152)||(46194287-46194353)
chr3 (87-172)||(2868514-2868599)
chr3 (71-112)||(50736101-50736142)
chr3 (71-112)||(50776713-50776754)
chr3 (71-135)||(1923067-1923131)
chr3 (87-135)||(16134486-16134533)
chr3 (87-163)||(26142855-26142931)
chr3 (71-115)||(32827370-32827414)
chr3 (87-135)||(39866635-39866683)
chr3 (114-166)||(43640674-43640726)
chr3 (71-135)||(44219099-44219163)
chr3 (72-132)||(48409564-48409624)
[»] chr1 (46 HSPs)
chr1 (71-214)||(2219515-2219659)
chr1 (71-166)||(5442287-5442381)
chr1 (71-166)||(36784260-36784355)
chr1 (87-180)||(27698744-27698837)
chr1 (71-214)||(11425936-11426082)
chr1 (87-166)||(19533002-19533081)
chr1 (89-203)||(48242675-48242790)
chr1 (71-203)||(49494230-49494363)
chr1 (89-175)||(17342765-17342851)
chr1 (87-180)||(11324180-11324273)
chr1 (87-180)||(11482201-11482294)
chr1 (87-167)||(28277121-28277201)
chr1 (87-175)||(46536277-46536365)
chr1 (87-167)||(52830496-52830576)
chr1 (87-153)||(30749714-30749780)
chr1 (87-153)||(30771165-30771231)
chr1 (93-166)||(7787623-7787696)
chr1 (95-172)||(49944731-49944807)
chr1 (87-167)||(34877173-34877252)
chr1 (89-164)||(7785359-7785433)
chr1 (87-166)||(10370270-10370349)
chr1 (78-202)||(8773146-8773276)
chr1 (82-152)||(16451591-16451661)
chr1 (82-152)||(16460744-16460814)
chr1 (87-132)||(8327697-8327742)
chr1 (87-199)||(36467278-36467391)
chr1 (71-175)||(4466221-4466325)
chr1 (87-131)||(28839321-28839364)
chr1 (71-214)||(29756209-29756358)
chr1 (87-135)||(38664378-38664426)
chr1 (71-167)||(51049454-51049549)
chr1 (71-154)||(24131467-24131550)
chr1 (86-153)||(31798377-31798444)
chr1 (71-174)||(52432250-52432353)
chr1 (86-152)||(2886131-2886197)
chr1 (71-153)||(36232856-36232938)
chr1 (96-166)||(43895793-43895863)
chr1 (87-132)||(3555638-3555683)
chr1 (72-113)||(7075471-7075512)
chr1 (71-132)||(12267698-12267759)
chr1 (87-152)||(29225713-29225778)
chr1 (71-104)||(45049040-45049073)
chr1 (87-132)||(45889331-45889376)
chr1 (87-135)||(10587664-10587712)
chr1 (71-167)||(16040022-16040118)
chr1 (87-175)||(17724797-17724885)
[»] scaffold0006 (1 HSPs)
scaffold0006 (71-187)||(229749-229864)
[»] scaffold0007 (1 HSPs)
scaffold0007 (71-166)||(230203-230297)
[»] scaffold0321 (1 HSPs)
scaffold0321 (87-166)||(9631-9710)
[»] scaffold0086 (1 HSPs)
scaffold0086 (86-167)||(5764-5844)
[»] scaffold0001 (1 HSPs)
scaffold0001 (87-132)||(394758-394803)
[»] scaffold0058 (1 HSPs)
scaffold0058 (87-135)||(14433-14481)
[»] scaffold0045 (1 HSPs)
scaffold0045 (89-214)||(26218-26345)
[»] scaffold0155 (1 HSPs)
scaffold0155 (84-153)||(8033-8102)


Alignment Details
Target: chr2 (Bit Score: 94; Significance: 5e-46; HSPs: 31)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 71 - 200
Target Start/End: Complemental strand, 28527005 - 28526876
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    |||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||| ||||||| |||||||||||||||||    
T  28527005 attgaattggaagttgtgaaagtaatattaattatagttataaagagaaaaaagtaattaatattatattgaaaagtgaaatgattcagttattttatga 28526906  T
Q  171 cacttcttttgcaaatggctcggttattat 200  Q
    ||||| ||||| ||||| ||||||||||||    
T  28526905 cactttttttgtaaatgactcggttattat 28526876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 5212024 - 5212168
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    ||||||||  |||||||||||||||||||||||| | ||||||||  | |||||||||||||||| ||| |||| ||||||||| |||||||||||| ||    
T  5212024 attgaattgaaagttgtgaaagtagtattaattaaatttataaaggaaaaaaagtaattaatattgtattgaaaagtgaaataactcagttattttagga 5212123  T
Q  171 cacttcttttgcaaatggctcggttattat-ggacggagggagta 214  Q
    |  || |||||||||||||||| ||||| | ||||||||| ||||    
T  5212124 ctttttttttgcaaatggctcgattattgtgggacggaggaagta 5212168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 75 - 214
Target Start/End: Complemental strand, 3100437 - 3100294
Alignment:
Q  75 aattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacac- 173  Q
    |||| ||||||||||||||||||||||||| ||||| |||| || |||||||||||||||| ||| |||| ||||||| | |||||||||||  |||||     
T  3100437 aattggaagttgtgaaagtagtattaattagagttacaaagggaaaaaagtaattaatattgtattgaaaagtgaaatgactcagttattttgagacact 3100338  T
Q  174 --ttcttttgcaaatggctcggttattat-ggacggagggagta 214  Q
      || ||||||||||||||| |||||| | ||||||||||||||    
T  3100337 tttttttttgcaaatggctcagttattgtgggacggagggagta 3100294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 71 - 214
Target Start/End: Complemental strand, 28572249 - 28572106
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||   ||||||||||||||| ||| |||| ||||||| | |||||||||||  ||    
T  28572249 attgaattggaagttgtgaaagtagtattaattacagttataaagag---aaagtaattaatattgtattgaaaagtgaaatgactcagttattttggga 28572153  T
Q  171 cacttct--tttgcaaatggctcggttattat-ggacggagggagta 214  Q
    ||||| |  |||||||||| ||| |||||| | ||||||||||||||    
T  28572152 cactttttatttgcaaatgtctcagttattgtgggacggagggagta 28572106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 15 - 72
Target Start/End: Complemental strand, 28527257 - 28527200
Alignment:
Q  15 caaaggggtgtacaattaagggtgtctacctatcattgctcataattttaaggttcat 72  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  28527257 caaaggggtgtacaattaagggtgtctacctatcattgctcataattttaagattcat 28527200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 82 - 215
Target Start/End: Complemental strand, 7213505 - 7213369
Alignment:
Q  82 agttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacact--tcttt 179  Q
    ||||||||||||||||||||||| |||||||||  |  |||||||||||||||| ||| |||| ||||||| ||| | |||||||  ||||||  | |||    
T  7213505 agttgtgaaagtagtattaattagagttataaaagggaaaaagtaattaatattgtattgaaaagtgaaatgatttaattattttgggacacttattttt 7213406  T
Q  180 tgcaaatggctcggttattat-ggacggagggagtag 215  Q
    |||||||| |||  ||||||| |||||||||||||||    
T  7213405 tgcaaatgactcacttattatgggacggagggagtag 7213369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 15859408 - 15859489
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    |||||||||||||||||||||||| | ||||||| |||||||||| || |||||||||||||||| ||| |||| |||||||    
T  15859408 attgaattagaagttgtgaaagtaatgttaattagagttataaagggaaaaaagtaattaatattgtattgaaaagtgaaat 15859489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 87 - 214
Target Start/End: Complemental strand, 40965077 - 40964948
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttc--ttttgcaa 184  Q
    |||||||| ||||||||| |||||||||| || |||||||||||||||| ||| ||||  | |||||| |||||||||||  |||| |||  ||||||||    
T  40965077 tgaaagtaatattaattagagttataaagggaaaaaagtaattaatattgtattgaaaaat-aaataactcagttattttgggacatttcttttttgcaa 40964979  T
Q  185 atggctcggttattat-ggacggagggagta 214  Q
    ||| ||| |||||||| |||| |||||||||    
T  40964978 atgactcagttattatgggactgagggagta 40964948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 93 - 200
Target Start/End: Original strand, 7650063 - 7650171
Alignment:
Q  93 tagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgaca-cttcttttgcaaatggctc 191  Q
    |||||||||||| |||||||||  || |||||||||||||||| |||  ||| ||||||| |||||||||||||| || |  || ||||||||||| |||    
T  7650063 tagtattaattagagttataaaaggaaaaaagtaattaatattgtatttaaaagtgaaatgattcagttattttaagatatttttttttgcaaatgactc 7650162  T
Q  192 ggttattat 200  Q
     ||||||||    
T  7650163 cgttattat 7650171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 87 - 214
Target Start/End: Complemental strand, 33751486 - 33751356
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttctt--ttgcaa 184  Q
    |||||||||||||||||| |||||||||| || |||||||||||||  | ||| |||| ||||||| | ||| |||||||  ||||||| ||  ||| ||    
T  33751486 tgaaagtagtattaattagagttataaagggaaaaaagtaattaatgatgtattgaaaagtgaaatgactcatttatttttggacacttttttattgaaa 33751387  T
Q  185 atggctcggttattatg-gacggagggagta 214  Q
    |||| || |||| |||| |||||||||||||    
T  33751386 atggttcagttagtatgagacggagggagta 33751356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 41436104 - 41436025
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||||||||||||||||| |||||||||  |  |||||||||||||||| ||| |||| ||||||| | |||||||||||    
T  41436104 tgaaagtagtattaattagagttataaaagggaaaaagtaattaatattgtattgaaaagtgaaatgactcagttatttt 41436025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 42881343 - 42881438
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||||||| |||||  ||| ||||||||||| || |||| ||||  || |||||||||||||||| ||| |||| ||||||| |||||||||||||    
T  42881343 attgaattggaagtgatgagagtagtattaagtagagttgtaaaaggaaaaaagtaattaatattgtattgaaaagtgaaatgattcagttatttt 42881438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 9724906 - 9724841
Alignment:
Q  86 gtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    ||||||||||||||||||| ||||||||||| | |||||||||||||||| ||| |||| |||||||    
T  9724906 gtgaaagtagtattaattagagttataaaga-aaaaaagtaattaatattgtattgaaaagtgaaat 9724841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 30757650 - 30757779
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacac--ttcttttgcaa 184  Q
    |||||||||||||||||| |||||||||   | |||||||||||||||| ||| |||| |||  ||   ||| | |||||  |||||  |||||||||||    
T  30757650 tgaaagtagtattaattagagttataaaagaaaaaaagtaattaatattgtattgaaaagtg-tatggctcattaatttttggacacttttcttttgcaa 30757748  T
Q  185 atggctcggttattat-ggacggagggagta 214  Q
    ||||||| |||||||| ||||||||||||||    
T  30757749 atggctcagttattatgggacggagggagta 30757779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 214
Target Start/End: Complemental strand, 31348552 - 31348406
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    |||||||||| | | |||||||||||||||||||  |||||||   || |||||||||||||||| ||| ||||  ||||||   ||| || || || ||    
T  31348552 attgaattaggaatggtgaaagtagtattaattagtgttataattggaaaaaagtaattaatattgtattgaaaattgaaatgggtcaatttttctagga 31348453  T
Q  171 ca--cttcttttgcaaatggctcggttattat-ggacggagggagta 214  Q
    ||   || ||||||||||||||| |||||||| ||||||||||||||    
T  31348452 caatatttttttgcaaatggctcagttattatgggacggagggagta 31348406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 71 - 165
Target Start/End: Complemental strand, 33880199 - 33880106
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattt 165  Q
    |||||||| | ||| ||||||||| ||||||||| |||||||||| || |||||||||||||||| |||  ||| ||||||| | ||| ||||||    
T  33880199 attgaattgggagtggtgaaagtaatattaattagagttataaaggga-aaaagtaattaatattgtattaaaaagtgaaatgactcaattattt 33880106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 10818662 - 10818557
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaa-gtaattaatattatatcgaaaggtgaaataattcagttattttatg 169  Q
    |||||||||| |||  |||||||  ||||||||| |||||||||| || |||| ||||||||||||||||  |||  |||||| | |||||||||||  |    
T  10818662 attgaattaggagtgatgaaagtgatattaattagagttataaagggaaaaaaagtaattaatattatattaaaaaatgaaatgactcagttattttgag 10818563  T
Q  170 acactt 175  Q
    ||||||    
T  10818562 acactt 10818557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 139
Target Start/End: Complemental strand, 34235090 - 34235022
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatat 139  Q
    |||||||||| |||  ||||| |||||||||||| |||||||||   | ||||||||||||||||||||    
T  34235090 attgaattaggagtgatgaaaatagtattaattaaagttataaatgaaaaaaagtaattaatattatat 34235022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 139
Target Start/End: Complemental strand, 37028783 - 37028731
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatat 139  Q
    |||||||| ||||||||| ||||||||| ||| |||| |||||||||||||||    
T  37028783 tgaaagtaatattaattagagttataaatagaaaaaaataattaatattatat 37028731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 7931573 - 7931643
Alignment:
Q  82 agttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    ||||||||||||||||||||||| ||||||||    | ||||||||||||| || ||| |||| |||||||    
T  7931573 agttgtgaaagtagtattaattagagttataattgaaaaaaagtaattaatgttgtattgaaaagtgaaat 7931643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 18181295 - 18181381
Alignment:
Q  87 tgaaagtagtattaattatagttataaagag-agaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgaca 172  Q
    |||||||||||||||||| ||||||||  || | |||| ||||||||||| ||| |||| |||||||   |||||||||||| ||||    
T  18181295 tgaaagtagtattaattagagttataattagaaaaaaaataattaatattgtattgaaaagtgaaatgggtcagttattttaggaca 18181381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 28925937 - 28925987
Alignment:
Q  94 agtattaattatagttataaagagagaaaagtaattaatattatatcgaaa 144  Q
    ||||||||||| |||||||||| || |||||||||||||||| ||| ||||    
T  28925937 agtattaattagagttataaagggaaaaaagtaattaatattgtattgaaa 28925987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 36103539 - 36103597
Alignment:
Q  94 agtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    ||||||||||| ||| |||||| |  |||||||||||||||| ||| ||||||||||||    
T  36103539 agtattaattagagtcataaaggggaaaaagtaattaatattgtattgaaaggtgaaat 36103597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 202
Target Start/End: Original strand, 43077808 - 43077926
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacac----ttcttttgc 182  Q
    |||||||| ||||||||| |||||||||  || |||| ||||||||||| ||| |||| ||||||| | || ||||||||  |||||    || ||||||    
T  43077808 tgaaagtaatattaattagagttataaaaggaaaaaa-taattaatattgtattgaaaagtgaaatgactccgttattttgggacactttttttttttgc 43077906  T
Q  183 aaatggctcggttattatgg 202  Q
    ||||||||| ||| ||||||    
T  43077907 aaatggctcagttgttatgg 43077926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 8550724 - 8550780
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaa 144  Q
    |||||||||||||||||||||||||||  | | |||||||||||||| ||||| ||||    
T  8550724 tgaaagtagtattaattatagttataatta-aaaaaagtaattaatactatattgaaa 8550780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 37529137 - 37529218
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    |||||||| ||||| ||||||||| ||||||||| ||||||||    | |||||||||||||||| ||| | || |||||||    
T  37529137 attgaattggaagtggtgaaagtaatattaattagagttataattgaaaaaaagtaattaatattgtattggaaagtgaaat 37529218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 144
Target Start/End: Complemental strand, 8031764 - 8031709
Alignment:
Q  89 aaagtagtattaattatagttataaa-gagagaaaagtaattaatattatatcgaaa 144  Q
    |||||||||||||||| ||||||||| |||| |||||||||||||||| ||| ||||    
T  8031764 aaagtagtattaattaaagttataaaggaga-aaaagtaattaatattgtattgaaa 8031709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 152
Target Start/End: Complemental strand, 24356151 - 24356071
Alignment:
Q  72 ttgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    ||||||| | ||| ||||||||||||||||||| ||||||||    | ||||||||||||| || ||| |||| |||||||    
T  24356151 ttgaattgggagtcgtgaaagtagtattaattagagttataattgaaaaaaagtaattaatgttgtattgaaaagtgaaat 24356071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 28108457 - 28108537
Alignment:
Q  87 tgaaagtagtattaattatagttataaagag-agaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||||||||||||||||| |||||||||| | | ||||||||||||| || ||| |||| ||| |||   |||||||||||    
T  28108457 tgaaagtagtattaattagagttataaagggaaaaaaagtaattaatgttgtattgaaaagtggaatggctcagttatttt 28108537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 43950521 - 43950600
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttta 167  Q
    |||||||  ||||||||| ||||||||   || |||| |||||||||||| || |||| ||||||||| ||||||||||||    
T  43950521 tgaaagtgatattaattaaagttataatt-gaaaaaaataattaatattacattgaaaagtgaaataagtcagttatttta 43950600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 44194668 - 44194597
Alignment:
Q  95 gtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttta 167  Q
    |||| ||||| |||||||||  || |||| ||||||||||| ||| |||| ||||||| ||||||||||||||    
T  44194668 gtataaattagagttataaaaggaaaaaa-taattaatattgtattgaaaagtgaaatgattcagttatttta 44194597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 34)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 7425944 - 7426089
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttata-aagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatg 169  Q
    |||||||| |||||||||||||||||||||| || ||||||| ||| || |||||||||||||||| ||| |||| |||||||   |||||||||||  |    
T  7425944 attgaattggaagttgtgaaagtagtattaactagagttatataagggaaaaaagtaattaatattgtattgaaaagtgaaatggctcagttattttggg 7426043  T
Q  170 acacttcttttgcaaatggctcggttattat-ggacggagggagta 214  Q
    |||||| ||||||||||||||| |||||| | ||||||||||||||    
T  7426044 acactttttttgcaaatggctcagttattgtgggacggagggagta 7426089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 38181940 - 38182035
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||||| | || ||||||||||| ||| |||| || |||| | |||||||||||    
T  38181940 attgaattggaagttgtgaaagtagtattaattagagttataaagagaaagaaataattaatattttattgaaaagtaaaatgactcagttatttt 38182035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 212
Target Start/End: Original strand, 46288497 - 46288640
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    ||||||||  ||||| |||||||||||||||||| |||||||||| || |||| ||||||||||||||| |||| |||||||   |||||||||||  ||    
T  46288497 attgaattgaaagttatgaaagtagtattaattagagttataaagggaaaaaattaattaatattatattgaaaagtgaaatggctcagttattttggga 46288596  T
Q  171 ca-cttcttttgcaaatggctcggttattatgg-acggagggag 212  Q
    ||  || |||| |||||| |||||||||| ||| ||||||||||    
T  46288597 catttttttttacaaatgactcggttattgtggaacggagggag 46288640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 71 - 214
Target Start/End: Complemental strand, 12308419 - 12308275
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||  || |||||||||||||||| ||| ||||  |||||| | |||||||||||  ||    
T  12308419 attgaattggaagttgtgaaagtaatattaattagagttataaa-tgaaaaaagtaattaatattgtattgaaaattgaaatgactcagttattttgaga 12308321  T
Q  171 ca-cttcttttgcaaatggctcggttattat-ggacggagggagta 214  Q
    ||  || |||| |||||| |||||||||| | ||||||||||||||    
T  12308320 cattttttttttcaaatgactcggttattgtgggacggagggagta 12308275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 180
Target Start/End: Complemental strand, 11616602 - 11616493
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    |||||||| | ||| |||||||| |||||||||| |||||||||| || |||||||||||||||| ||| |||| |||||||   |||||||||||  ||    
T  11616602 attgaattgggagtggtgaaagttgtattaattagagttataaagggaaaaaagtaattaatattgtattgaaaagtgaaatggctcagttattttggga 11616503  T
Q  171 cacttctttt 180  Q
    ||||| ||||    
T  11616502 cacttgtttt 11616493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 216
Target Start/End: Complemental strand, 30463041 - 30462909
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgaca--cttcttttgcaa 184  Q
    |||||||| ||||||||| |||||||||  || |||||| ||||||||| ||| |||| ||||||| | ||| |||||||||||||   || ||||||||    
T  30463041 tgaaagtaatattaattagagttataaaaggaaaaaagtcattaatattgtatggaaaagtgaaatgactcaattattttatgacattttttttttgcaa 30462942  T
Q  185 atggctcggttattat-ggacggagggagtagc 216  Q
    ||| |||  ||||||| ||||||||||||||||    
T  30462941 atgactcaattattatgggacggagggagtagc 30462909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 180
Target Start/End: Original strand, 31581525 - 31581618
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttctttt 180  Q
    |||||||||||||||||| |||||||||  || |||||||||||||||| ||| |||| ||||||| | |||||||||||| || |||| ||||    
T  31581525 tgaaagtagtattaattagagttataaatggaaaaaagtaattaatattgtattgaaaagtgaaatgactcagttattttaggatacttttttt 31581618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 87 - 214
Target Start/End: Complemental strand, 33584588 - 33584457
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttctt---ttgca 183  Q
    ||||||||||||||||||||||||||||| || |||||||||||||  | |||  ||| |||||||   |||||||||||  ||||||| ||   ||| |    
T  33584588 tgaaagtagtattaattatagttataaagggaaaaaagtaattaatgatgtattcaaaagtgaaatggctcagttattttgagacactttttttattgaa 33584489  T
Q  184 aatggctcggttattat-ggacggagggagta 214  Q
    |||| ||| |||||||| ||||||||||||||    
T  33584488 aatgcctcagttattatgggacggagggagta 33584457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 2846758 - 2846888
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttctt--ttgcaa 184  Q
    |||||||||||||||||| |||||||||  || |||||||||||||  | ||| |||| ||||||| | ||| |||||||  ||||||| ||  ||| ||    
T  2846758 tgaaagtagtattaattagagttataaaaggaaaaaagtaattaatgatgtattgaaaagtgaaatgactcacttattttgggacacttttttattgaaa 2846857  T
Q  185 atggctcggttattat-ggacggagggagta 214  Q
    ||| ||| |||||||| ||||||||||||||    
T  2846858 atgactcagttattatgggacggagggagta 2846888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 34963893 - 34963972
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||||||| ||||||||| |||||||||| || |||||||||||||| | ||| |||| ||||||| | |||||||||||    
T  34963893 tgaaagtaatattaattagagttataaagggaaaaaagtaattaatactgtattgaaaagtgaaatgactcagttatttt 34963972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 87 - 214
Target Start/End: Complemental strand, 39498699 - 39498569
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgaca--cttcttttgcaa 184  Q
    |||||||| ||||||||| | ||||||  ||| ||||||||||||||||  || |||| | ||||||  |||||||||||||||||   || |||| |||    
T  39498699 tgaaagtaatattaattagaattataattagaaaaaagtaattaatattgcattgaaaagagaaataggtcagttattttatgacaatatttttttacaa 39498600  T
Q  185 atggctcggttattatgg-acggagggagta 214  Q
    | ||||| |||||||||| ||||||||||||    
T  39498599 aaggctcagttattatggaacggagggagta 39498569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 81 - 215
Target Start/End: Original strand, 33774119 - 33774254
Alignment:
Q  81 aagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacac--ttctt 178  Q
    |||||||||||||||||||||||| | |||||||| || |||| ||||||||||| ||| |||| ||||||| | |||||||||||   ||||  || ||    
T  33774119 aagttgtgaaagtagtattaattagaattataaag-ga-aaaaataattaatattgtattgaaaagtgaaatgactcagttattttggaacacttttttt 33774216  T
Q  179 ttgcaaatggctcggttattatg-gacggagggagtag 215  Q
    ||| ||||| ||| |||||| || ||||||||||||||    
T  33774217 ttgtaaatgactcagttattgtgagacggagggagtag 33774254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 30659546 - 30659627
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    |||||||| ||||| ||||||||||||||||||| ||||||||   || ||||||||||||| || ||| |||| |||||||    
T  30659546 attgaatttgaagtggtgaaagtagtattaattagagttataattggaaaaaagtaattaatgttgtattgaaaagtgaaat 30659627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 37264354 - 37264273
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    |||||||| | ||| ||||||||||||||||||| ||||||||  ||  |||||||||||||||| ||| |||| |||||||    
T  37264354 attgaattgggagtggtgaaagtagtattaattagagttataattaggaaaaagtaattaatattgtattgaaaagtgaaat 37264273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 40590909 - 40590986
Alignment:
Q  89 aaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||||||||||||||| |||||||||  || |||||||||||||||| |||  ||| ||||||| | |||||||||||    
T  40590909 aaagtagtattaattagagttataaaaggaaaaaagtaattaatattgtatttaaaagtgaaatgactcagttatttt 40590986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 180
Target Start/End: Complemental strand, 23703939 - 23703847
Alignment:
Q  89 aaagtagtattaattatagttataaagagagaaaagtaattaat-attatatcgaaaggtgaaataattcagttattttatgacacttctttt 180  Q
    |||||||||||||||| |||||||||  || ||||||||||||| ||| ||| | || || |||| ||||||||||||||||| |||| ||||    
T  23703939 aaagtagtattaattagagttataaatggaaaaaagtaattaataattgtattggaaagtaaaatgattcagttattttatgatacttttttt 23703847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 175
Target Start/End: Original strand, 45890919 - 45891006
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacactt 175  Q
    |||||||| |||||||||||||||||||| || |||| |||||| |||| ||| |||| |||||||   ||||||||||| ||||||||    
T  45890919 tgaaagtaatattaattatagttataaaggga-aaaaataattattattgtattgaaaagtgaaattgctcagttattttgtgacactt 45891006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 122 - 214
Target Start/End: Complemental strand, 48981369 - 48981274
Alignment:
Q  122 aagtaattaatattatatcgaaaggtgaaataattcagttattttatgacactt--cttttgcaaatggctcggttattat-ggacggagggagta 214  Q
    |||||||||||||| ||| |||| ||||||| | |||||||||||  |||||||   ||||||||| |||||| ||||||| ||||||||||||||    
T  48981369 aagtaattaatattgtattgaaaagtgaaatgactcagttattttgggacactttatttttgcaaacggctcgattattatgggacggagggagta 48981274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 214
Target Start/End: Complemental strand, 29257572 - 29257442
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttctt--ttgcaa 184  Q
    |||||||| ||||||||| |||||||||| || |||||||||||||  | ||| |||| ||||||||  ||| |||||||  ||||||| ||  ||| ||    
T  29257572 tgaaagtaatattaattagagttataaagggaaaaaagtaattaatgatgtattgaaaagtgaaatagctcacttattttgggacacttttttattgaaa 29257473  T
Q  185 atggctcggttattatg-gacggagggagta 214  Q
    ||| ||| ||||||||| |||||| ||||||    
T  29257472 atgactcagttattatgagacggatggagta 29257442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 94 - 215
Target Start/End: Complemental strand, 37157188 - 37157062
Alignment:
Q  94 agtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttcttt----tgcaaatggc 189  Q
    ||||||||||| ||||||||| ||| |||| ||||||||||| ||| |||| ||||||||  |||||||||||| |||  || |||    |||||||| |    
T  37157188 agtattaattagagttataaa-agaaaaaaataattaatattgtattgaaaagtgaaatagctcagttattttaggactttttttttgtgtgcaaatgac 37157090  T
Q  190 tcggttattat--ggacggagggagtag 215  Q
    || ||||||||  |||||||||||||||    
T  37157089 tcagttattatggggacggagggagtag 37157062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 87 - 215
Target Start/End: Original strand, 2842134 - 2842259
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttcttttgcaaat 186  Q
    |||||||||||||||||||| ||||||| ||| |||| ||||||||||||    |||| || |||| | |||||||||||| |||| || |||| |||||    
T  2842134 tgaaagtagtattaattataattataaa-agaaaaaa-taattaatattagt--gaaaagtaaaatgactcagttattttaggacatttgttttacaaat 2842229  T
Q  187 ggctcggttattatg-gacggagggagtag 215  Q
    | ||| ||||||||| ||||||| ||||||    
T  2842230 gactcagttattatgagacggagagagtag 2842259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 180
Target Start/End: Original strand, 29434662 - 29434755
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttctttt 180  Q
    |||||||||||||||||| |||||||||| |  |||| ||||||||||| ||| | || | ||||| | |||||||||||  ||||||| ||||    
T  29434662 tgaaagtagtattaattagagttataaaggggaaaaaataattaatattgtattggaaagcgaaatgactcagttattttgagacacttttttt 29434755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 166
Target Start/End: Original strand, 46095532 - 46095609
Alignment:
Q  89 aaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||||||||||||||| |||||||||  || |||| ||||||||||| ||| |||| ||||||| | || ||||||||    
T  46095532 aaagtagtattaattagagttataaaatgaaaaaattaattaatattgtattgaaaagtgaaatgactcggttatttt 46095609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 47454029 - 47453964
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    ||||||||||| ||||||||||||||||| || |||| | ||||||||| ||| |||| |||||||    
T  47454029 tgaaagtagtaataattatagttataaagggaaaaaaatgattaatattgtattgaaaagtgaaat 47453964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 144
Target Start/End: Original strand, 23111611 - 23111669
Alignment:
Q  86 gtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaa 144  Q
    |||||||||||||||||||  |||||||   || |||||||||||||||||||| ||||    
T  23111611 gtgaaagtagtattaattagtgttataattggaaaaaagtaattaatattatattgaaa 23111669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 167
Target Start/End: Original strand, 27242822 - 27242892
Alignment:
Q  97 attaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttta 167  Q
    |||||||| ||||||||  ||| ||| |||||||||| || || |||| ||||||||| ||||||||||||    
T  27242822 attaattagagttataattagaaaaaggtaattaatactacattgaaaagtgaaataagtcagttatttta 27242892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 180
Target Start/End: Complemental strand, 39693809 - 39693723
Alignment:
Q  94 agtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttctttt 180  Q
    ||||||||||| |||||||||| || |||||||||||||  | ||| |||| ||||||| | ||| |||||||  ||||||| ||||    
T  39693809 agtattaattagagttataaagggaaaaaagtaattaatgatgtattgaaaagtgaaatgactcacttattttgggacacttttttt 39693723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 165
Target Start/End: Original strand, 40038193 - 40038270
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattt 165  Q
    |||||||||||||||||| |||||||||| || |||| ||||||||  ||||| |||| ||||||| | ||| ||||||    
T  40038193 tgaaagtagtattaattagagttataaag-gaaaaaaataattaatgatatattgaaaagtgaaatgactcacttattt 40038270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 5724773 - 5724854
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    |||||||||||| |   ||||||||||||||||| |||||||||   | |||||| ||||||||| ||| |||| |||||||    
T  5724773 attgaattagaaatgaagaaagtagtattaattagagttataaaagaaaaaaagtgattaatattgtattgaaaagtgaaat 5724854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 9602887 - 9602838
Alignment:
Q  86 gtgaaagtagtattaattatagttataaagagagaaaagtaattaatatt 135  Q
    |||||||||||||||||||  |||||||  ||| ||||||||||||||||    
T  9602887 gtgaaagtagtattaattagtgttataattagaaaaaagtaattaatatt 9602838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 86 - 135
Target Start/End: Complemental strand, 9830458 - 9830409
Alignment:
Q  86 gtgaaagtagtattaattatagttataaagagagaaaagtaattaatatt 135  Q
    |||||||||||||||||||  |||||||  ||| ||||||||||||||||    
T  9830458 gtgaaagtagtattaattagtgttataattagaaaaaagtaattaatatt 9830409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 32776024 - 32775960
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatatt 135  Q
    |||||||| | ||| ||||||||||||||| ||| ||||||||   || ||||||||||||||||    
T  32776024 attgaattgggagtggtgaaagtagtattatttagagttataattggaaaaaagtaattaatatt 32775960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 38589775 - 38589711
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatatt 135  Q
    |||||||| | ||| |||||||||||||||||||  |||||||   || ||||||||||||||||    
T  38589775 attgaattgggagtggtgaaagtagtattaattagtgttataattggaaaaaagtaattaatatt 38589711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 81 - 153
Target Start/End: Complemental strand, 41059429 - 41059357
Alignment:
Q  81 aagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaata 153  Q
    |||| ||||||||||||||||||| | ||||||    | |||||||||||||||||||| ||||  |||||||    
T  41059429 aagtggtgaaagtagtattaattaaatttataattgaaaaaaagtaattaatattatattgaaaaatgaaata 41059357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 4e-28; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 42575705 - 42575851
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    |||||||| ||||||||||||||||||||||||| |||||||||| || |||||||||||||||| ||| |||| |||||||   || ||||||||  ||    
T  42575705 attgaattggaagttgtgaaagtagtattaattaaagttataaagggaaaaaagtaattaatattgtattgaaaagtgaaatggctcggttattttggga 42575804  T
Q  171 cac--ttcttttgcaaatggctcggttattat-ggacggagggagta 214  Q
    |||  ||||||| |||||||||| |||||| | ||||||||||||||    
T  42575805 cacttttcttttacaaatggctcagttattgtgggacggagggagta 42575851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 22582938 - 22583085
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    |||||||| ||||||||||||||||||||||||| ||||||||||| | |||| ||||||||||| ||| ||||  |||||||| |||||||||| | ||    
T  22582938 attgaattggaagttgtgaaagtagtattaattagagttataaagaaaaaaaaataattaatattgtattgaaaattgaaataactcagttatttaagga 22583037  T
Q  171 cac---ttcttttgcaaatggctcggttattat-ggacggagggagta 214  Q
    |||   || ||||||||||| ||  |||||| | ||||||||||||||    
T  22583038 cacatttttttttgcaaatgacttagttattgtgggacggagggagta 22583085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 35646156 - 35646303
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    |||||||||||||||||||||||||||||||||| |||||||||  || |||||||||||||||  ||| |||| ||||||| | |||||||| ||  ||    
T  35646156 attgaattagaagttgtgaaagtagtattaattagagttataaaaggaaaaaagtaattaatatcgtattgaaaagtgaaatgactcagttatattgaga 35646255  T
Q  171 cac---ttcttttgcaaatggctcggttattat-ggacggagggagta 214  Q
    |||   || |||||||||| |||| |||||||| ||| ||||||||||    
T  35646256 cacttttttttttgcaaatagctcagttattatgggatggagggagta 35646303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 71 - 214
Target Start/End: Complemental strand, 39008169 - 39008025
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    |||||||| |||||| |||||||||||||||||| |||||||||| || |||| ||||||||||| ||| |||| ||||||| | | |||||||||| ||    
T  39008169 attgaattggaagtt-tgaaagtagtattaattagagttataaagggaaaaaaataattaatattgtattgaaaagtgaaatgacttagttattttagga 39008071  T
Q  171 ca-cttcttttgcaaatggctcggttattat-ggacggagggagta 214  Q
    ||  || ||||||||||  ||| |||||| | ||||||||||||||    
T  39008070 catttttttttgcaaataactcagttattgtgggacggagggagta 39008025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 167
Target Start/End: Complemental strand, 4412424 - 4412328
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttta 167  Q
    |||||||||||| |  ||||| |||||||||||| |||||||||| || |||||||||||||||| ||| |||| ||||||| | | ||||||||||    
T  4412424 attgaattagaaatgatgaaaatagtattaattagagttataaagggaaaaaagtaattaatattgtattgaaaagtgaaatgacttagttatttta 4412328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 8369763 - 8369910
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttat-aaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatg 169  Q
    ||||||||  |||||||||||||||||||||||| |||||| ||||| | |||| ||||||||||| ||| ||||  ||||||   |||||||||||  |    
T  8369763 attgaattgaaagttgtgaaagtagtattaattagagttataaaagaaaaaaaaataattaatattgtattgaaaaatgaaatggctcagttattttggg 8369862  T
Q  170 acacttct--tttgcaaatggctcggttattat-ggacggagggagta 214  Q
    |||||| |  |||||||||||||| | |||| | ||||||||||||||    
T  8369863 acactttttatttgcaaatggctcagctattgtgggacggagggagta 8369910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 87 - 214
Target Start/End: Complemental strand, 3725211 - 3725082
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttctt--ttgcaa 184  Q
    |||||||| ||||||||| |||||||||| || ||||  |||||||||| ||| |||| ||||||| | |||||||||||| ||||||| ||  ||||||    
T  3725211 tgaaagtaatattaattagagttataaagggaaaaaaa-aattaatattgtattgaaaagtgaaatgactcagttattttaggacacttttttattgcaa 3725113  T
Q  185 atggctcggttattat-ggacggagggagta 214  Q
    |||  || |||||||| ||||||||||||||    
T  3725112 atgattcagttattatgggacggagggagta 3725082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 201
Target Start/End: Complemental strand, 858360 - 858246
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttcttttgcaaat 186  Q
    |||||||||||||||||| ||||||||||  | |||||||||||||||| ||| |||| ||||||| | || |||||||||  ||| || ||||  ||||    
T  858360 tgaaagtagtattaattagagttataaaggtaaaaaagtaattaatattgtattgaaatgtgaaatgactcggttattttagaacattttttttttaaat 858261  T
Q  187 ggctcggttattatg 201  Q
    |||||| ||| ||||    
T  858260 ggctcgattactatg 858246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 91 - 180
Target Start/End: Complemental strand, 25814385 - 25814296
Alignment:
Q  91 agtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttctttt 180  Q
    |||| ||||||||| |||||||||  || |||||||||||||||| ||| |||| ||||||| ||||||||||||||  |||||| ||||    
T  25814385 agtaatattaattaaagttataaaaggaaaaaagtaattaatattgtattgaaaagtgaaatgattcagttattttagaacacttttttt 25814296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 106 - 211
Target Start/End: Complemental strand, 7276389 - 7276282
Alignment:
Q  106 agttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgac-acttcttttgcaaatggctcggttattat-gga 203  Q
    |||||||||| || |||||||||||||||| ||| |||| || |||||| |||||||||||| |||   || ||||||||||||||| |||||| | |||    
T  7276389 agttataaagtgaaaaaagtaattaatattgtattgaaaagtaaaataactcagttattttaggacttttttttttgcaaatggctcagttattttggga 7276290  T
Q  204 cggaggga 211  Q
    ||||||||    
T  7276289 cggaggga 7276282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 166
Target Start/End: Original strand, 8692889 - 8692980
Alignment:
Q  75 aattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||| ||||||||||||||| ||||||||| ||||||||||  | |||||||||||||||| ||| ||||  |||||| | || ||||||||    
T  8692889 aattggaagttgtgaaagtaatattaattagagttataaaggaaaaaaagtaattaatattgtattgaaaaatgaaatgactcggttatttt 8692980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 11099560 - 11099639
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||||||||||||||||| |||||||||| |  |||||||||||||||| ||| | || ||||||| | |||||||||||    
T  11099560 tgaaagtagtattaattagagttataaaggggaaaaagtaattaatattgtattggaaagtgaaatgactcagttatttt 11099639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 87 - 214
Target Start/End: Complemental strand, 33012379 - 33012249
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacactt--cttttgcaa 184  Q
    ||||||||||||||| ||  |||||||||||| ||||||||||||||||  || |||| |||||||   |||| ||||||  || ||||   ||||||||    
T  33012379 tgaaagtagtattaactagcgttataaagagaaaaaagtaattaatattgcattgaaaagtgaaatggctcagatattttgggatactttgtttttgcaa 33012280  T
Q  185 atggctcggttattat-ggacggagggagta 214  Q
    ||| |||||||||||| |||||||| |||||    
T  33012279 atgactcggttattatgggacggagtgagta 33012249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 86 - 214
Target Start/End: Original strand, 4044559 - 4044690
Alignment:
Q  86 gtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgaca---cttcttttgc 182  Q
    |||||| || ||||||||| | |||||||| || |||||||||||||||| ||| |||| ||||||| ||||| |||||||  ||||    || ||||||    
T  4044559 gtgaaaatattattaattaaatttataaag-gaaaaaagtaattaatattgtattgaaaagtgaaatgattcaattattttgggacattttttattttgc 4044657  T
Q  183 aaatggctcggttattat-ggacggagggagta 214  Q
    ||||| ||| |||||||| ||||||||||||||    
T  4044658 aaatgactcagttattatgggacggagggagta 4044690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 180
Target Start/End: Complemental strand, 13135794 - 13135685
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    |||||||||| |||  ||||||||||| |||||| |||||||||| || |||| || |||||||| ||| |||| ||||||| | ||  ||||||| |||    
T  13135794 attgaattaggagtgatgaaagtagtagtaattaaagttataaagggaaaaaaatatttaatattgtattgaaaagtgaaatgactcgattattttttga 13135695  T
Q  171 cacttctttt 180  Q
    ||||| ||||    
T  13135694 cacttttttt 13135685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 202
Target Start/End: Complemental strand, 15814686 - 15814570
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttcttt---tgca 183  Q
    |||||||||||||||||| ||||||||  ||| |||| ||||||||||| ||| |||| ||||||| | |||||||||||  |||| || |||   ||||    
T  15814686 tgaaagtagtattaattagagttataa--agaaaaaaataattaatattgtattgaaaagtgaaatgactcagttattttgagacatttttttgggtgca 15814589  T
Q  184 aatggctcggttattatgg 202  Q
    ||| |||| ||||||||||    
T  15814588 aatagctcagttattatgg 15814570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 215
Target Start/End: Complemental strand, 6610862 - 6610729
Alignment:
Q  87 tgaaagtagtattaattatagttataaagag--agaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgac--acttcttttgc 182  Q
    |||||||| ||||||||| ||||||||||||  | |||||||||||||||| |||  ||| ||||||| | |||||||||||  |||    || |||||     
T  6610862 tgaaagtaatattaattaaagttataaagagaaaaaaaagtaattaatattgtatttaaaagtgaaatgactcagttattttgggactttttttttttga 6610763  T
Q  183 aaatggctcggttattat-ggacggagggagtag 215  Q
    ||||| ||| |||||||| |||||||||||||||    
T  6610762 aaatgactcagttattatgggacggagggagtag 6610729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 166
Target Start/End: Complemental strand, 7613730 - 7613653
Alignment:
Q  89 aaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||||| ||||||||||||||||||||  | |||||||||||||||| |||  ||| |||||||  || |||||||||    
T  7613730 aaagtaatattaattatagttataaaggaaaaaaagtaattaatattgtattaaaaagtgaaatggtttagttatttt 7613653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 17243037 - 17243116
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttta 167  Q
    |||||||||||||||||| |||||||||| || |||||||||||||  | |||  ||| ||||||||| ||| ||||||||    
T  17243037 tgaaagtagtattaattagagttataaaggga-aaaagtaattaatgatgtattaaaaagtgaaataactcacttatttta 17243116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 20189917 - 20189837
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttta 167  Q
    |||||||| ||||||||| |||||||||| || |||| ||||||||||| |||  ||| ||||||| | ||||||| ||||    
T  20189917 tgaaagtaatattaattagagttataaagggaaaaaaataattaatattgtattaaaaagtgaaatgactcagttaattta 20189837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 13717035 - 13716956
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    ||||| || ||||||||| |||||||||| || |||||||||||||||| ||| ||||  | |||| | |||||||||||    
T  13717035 tgaaaataatattaattagagttataaagggaaaaaagtaattaatattgtattgaaaaataaaatgactcagttatttt 13716956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 14259692 - 14259613
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    ||||| || ||||||||| | |||||||  || |||||||||||||||||||| ||||  |||||| | |||||||||||    
T  14259692 tgaaattaatattaattagaattataaaaggaaaaaagtaattaatattatattgaaaaatgaaatgaatcagttatttt 14259613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 42818930 - 42818863
Alignment:
Q  86 gtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaata 153  Q
    |||||| |||||||||||| ||||||||    | |||||||||||||||||||| |||| ||||||||    
T  42818930 gtgaaaatagtattaattagagttataattgaaaaaaagtaattaatattatattgaaaagtgaaata 42818863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 4194681 - 4194600
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    |||||||| | ||| |||||||||||||||||||  |||||||    | |||||||||||||||| ||| |||| |||||||    
T  4194681 attgaattgggagtggtgaaagtagtattaattagtgttataattgaaaaaaagtaattaatattgtattgaaaagtgaaat 4194600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 113
Target Start/End: Complemental strand, 43525518 - 43525477
Alignment:
Q  72 ttgaattagaagttgtgaaagtagtattaattatagttataa 113  Q
    ||||||| ||||| ||||||||||||||||||| ||||||||    
T  43525518 ttgaattggaagtggtgaaagtagtattaattagagttataa 43525477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 5357884 - 5357988
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    |||| ||| ||||| ||||||||| ||||||||| ||||||||   || |||||||||||||| | ||| | || ||||||| |  ||||||||||  ||    
T  5357884 attgtattggaagtggtgaaagtaatattaattagagttataatttgaaaaaagtaattaatactgtattggaaagtgaaatgacacagttattttggga 5357983  T
Q  171 cactt 175  Q
    |||||    
T  5357984 cactt 5357988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 16283670 - 16283797
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttcttttgcaaat 186  Q
    ||||||||| || ||||| ||||||||  | | |||| || |||||||| ||| | || ||||||||| |||||||||||| |||| |  |||| | ||     
T  16283670 tgaaagtagcatcaattagagttataattaaaaaaaa-tacttaatattctattgtaaagtgaaataaatcagttattttaggacaatattttttccaaa 16283768  T
Q  187 ggctcggttattat-ggacggagggagta 214  Q
    || ||||||||||| ||||||||||||||    
T  16283769 ggttcggttattataggacggagggagta 16283797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 60; Significance: 1e-25; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 3604666 - 3604812
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||| || |||| ||||||||||| ||| |||| ||||||| | |||||||||||| ||    
T  3604666 attgaattggaagttgtgaaagtaatattaattagagttataaagggaaaaaaataattaatattgtattgaaaagtgaaatgactcagttattttagga 3604765  T
Q  171 cacttct--tttgcaaatggctcggttattat-ggacggagggagta 214  Q
    || || |  ||| |||||||||| |||||| | ||||||||||||||    
T  3604766 cattttttatttacaaatggctctgttattgtgggacggagggagta 3604812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 71 - 202
Target Start/End: Complemental strand, 15081464 - 15081331
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    |||||||| ||| || |||||||||||||||||| |||||||||| || |||||||||||||||| ||| |||| |||||||  ||||||||||||  ||    
T  15081464 attgaattggaaattatgaaagtagtattaattagagttataaagggaaaaaagtaattaatattgtattgaaaagtgaaattgttcagttattttggga 15081365  T
Q  171 cacttctttt--gcaaatggctcggttattatgg 202  Q
    ||||| ||||  ||| ||| ||| ||||||||||    
T  15081364 cacttttttttcgcagatgactcagttattatgg 15081331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 71 - 175
Target Start/End: Complemental strand, 4238462 - 4238359
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    ||||||||  |||||||||| ||||||||||||| ||||||||||||| |||| ||||||||||| ||| ||||| | |||| | ||| |||||||| ||    
T  4238462 attgaattgaaagttgtgaa-gtagtattaattaaagttataaagagaaaaaaataattaatattgtattgaaagataaaatgactcaattattttagga 4238364  T
Q  171 cactt 175  Q
    |||||    
T  4238363 cactt 4238359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 31265820 - 31265726
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||| || |||| ||||||||||| ||| |||| ||||||| | | |||||||||    
T  31265820 attgaattggaagttgtgaaagtaatattaattagagttataaag-gaaaaaaataattaatattgtattgaaaagtgaaatgactaagttatttt 31265726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 87 - 172
Target Start/End: Original strand, 30064031 - 30064116
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgaca 172  Q
    |||||||| ||||||||| |||||||||| || |||||||||||||||| ||| | || ||||||| | |||||||||||| ||||    
T  30064031 tgaaagtaatattaattagagttataaagggaaaaaagtaattaatattgtattggaaagtgaaatgactcagttattttaggaca 30064116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 26356310 - 26356247
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatatt 135  Q
    ||||||||||||||  |||||||||||||||||| |||||||| |||| ||||||||||||||||    
T  26356310 attgaattagaagtgatgaaagtagtattaattaaagttataatgaga-aaaagtaattaatatt 26356247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 9354509 - 9354575
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattat 137  Q
    |||||||||| ||||||||||||||||||||||| ||||||||    | ||||||||||||||||||    
T  9354509 attgaattaggagttgtgaaagtagtattaattagagttataattgaaaaaaagtaattaatattat 9354575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 152
Target Start/End: Original strand, 34803784 - 34803854
Alignment:
Q  82 agttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    ||||||||||||||||||||||||||||||||    | |||||||||| ||||| ||| |||| |||||||    
T  34803784 agttgtgaaagtagtattaattatagttataattgaaaaaaagtaattgatattgtattgaaaagtgaaat 34803854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 15321307 - 15321372
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    ||||||||||||||||||  |||||||  ||| ||||||||||||||| |||| |||| |||||||    
T  15321307 tgaaagtagtattaattagtgttataattagaaaaaagtaattaatataatattgaaacgtgaaat 15321372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 33921535 - 33921599
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatatt 135  Q
    |||||||| | |||||| |||||||||||||||| ||||||||   || ||||||||||||||||    
T  33921535 attgaattgggagttgtaaaagtagtattaattagagttataattggaaaaaagtaattaatatt 33921599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 214
Target Start/End: Complemental strand, 33109398 - 33109268
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacac--ttcttttgcaa 184  Q
    |||||||||||||||||| |||||||||  || |||| |||||| |||| ||| |||| || ||||   |||||| ||||   ||||  || ||||||||    
T  33109398 tgaaagtagtattaattagagttataaatggaaaaaaataattagtattgtattgaaaagtaaaatggctcagttgttttggaacactttttttttgcaa 33109299  T
Q  185 atggctcggttattat-ggacggagggagta 214  Q
    || |||| |||||||| ||||||||||||||    
T  33109298 atagctcagttattatgggacggagggagta 33109268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 15371929 - 15372011
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaata 153  Q
    |||||||| | ||| |||||||||||||||||||  |||||||   || ||||||||| ||||| |||| |||| ||||||||    
T  15371929 attgaattgggagtggtgaaagtagtattaattagtgttataattggaaaaaagtaataaatataatattgaaaagtgaaata 15372011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 7301162 - 7301227
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    |||||||| ||||| ||| |||||||||| || |||| ||||||||||| ||| |||| |||||||    
T  7301162 tgaaagtaatattagttagagttataaagggaaaaaaataattaatattgtattgaaaagtgaaat 7301227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 152
Target Start/End: Original strand, 9755229 - 9755293
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    ||||| || ||||||||| |||||||||| || |||||||||||||||| ||| |||| |||||||    
T  9755229 tgaaaataatattaattacagttataaag-gaaaaaagtaattaatattgtattgaaaagtgaaat 9755293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 122 - 170
Target Start/End: Complemental strand, 20383829 - 20383781
Alignment:
Q  122 aagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    |||||||||||||| |||  ||| ||||||||| |||||||||||||||    
T  20383829 aagtaattaatattgtattaaaaagtgaaataagtcagttattttatga 20383781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 6e-24; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 87 - 215
Target Start/End: Original strand, 38252520 - 38252651
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacac--ttcttttgcaa 184  Q
    ||||||||||||| |||| |||||||||| || |||||||||||||||| |||| ||| |||||||  ||||||||||||  |||||  || ||||||||    
T  38252520 tgaaagtagtattgattagagttataaagggaaaaaagtaattaatattgtatcaaaaagtgaaatggttcagttattttgggacactttttttttgcaa 38252619  T
Q  185 atggctcggttattat-ggacggagggagtag 215  Q
    ||| ||| |||||||| |||||||||||||||    
T  38252620 atgactcagttattatgggacggagggagtag 38252651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 73 - 180
Target Start/End: Original strand, 32241492 - 32241599
Alignment:
Q  73 tgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgaca 172  Q
    |||||| ||||||||||||||| ||||||||| |||||||||| || |||||||||||||||| ||| |||| ||||||||| ||| |||||||| || |    
T  32241492 tgaattggaagttgtgaaagtaatattaattagagttataaagggaaaaaagtaattaatattgtattgaaaagtgaaataactcatttattttaggata 32241591  T
Q  173 cttctttt 180  Q
    ||| ||||    
T  32241592 cttttttt 32241599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 33190975 - 33191070
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||||||| |||||||||||||||||| |||||| |||||||||| || |||||||||||||||| ||| |||| ||||||| | |||||||||||    
T  33190975 attgaattggaagttgtgaaagtagtactaattagagttataaagggaaaaaagtaattaatattgtattgaaaagtgaaatgactcagttatttt 33191070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 214
Target Start/End: Complemental strand, 5392074 - 5391943
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaa-gtaattaatattatatcgaaaggtgaaataattcagttattttatgacac--ttcttttgca 183  Q
    |||||||||||||||||| |||||||||| || |||| |||||||||||| ||| |||| ||||||| | |||||||||||  |||||  || |||||||    
T  5392074 tgaaagtagtattaattagagttataaagggaaaaaaagtaattaatattgtattgaaaagtgaaatgactcagttattttgagacactttttttttgca 5391975  T
Q  184 aatggctcggttattatgg-acggagggagta 214  Q
    ||||||||   |||||||| ||||||||||||    
T  5391974 aatggctcaaatattatggaacggagggagta 5391943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 214
Target Start/End: Complemental strand, 2119755 - 2119611
Alignment:
Q  73 tgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgaca 172  Q
    ||||||||||||||||||| ||  |||||||| ||||||||||  | || | ||||||||||| ||| |||| ||||||||  |||||||||||  ||||    
T  2119755 tgaattagaagttgtgaaaataagattaattagagttataaaggaaaaataataattaatattgtattgaaatgtgaaatagctcagttattttgggaca 2119656  T
Q  173 cttctt--ttgcaaatggctcggttattatgg-acggagggagta 214  Q
    ||| ||  || |||||| ||| |||||||||| ||||||||||||    
T  2119655 ctttttaattacaaatgactcagttattatggaacggagggagta 2119611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 29615823 - 29615744
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||||||||||||||||| |||||||||| || |||| ||||||||||| ||| |||| || |||| |||||||||||||    
T  29615823 tgaaagtagtattaattaaagttataaagggaaaaaaataattaatattgtattgaaaagtaaaatgattcagttatttt 29615744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 39171568 - 39171489
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    ||||| |||||||||||| ||||||||| ||| |||||||||||||||||||| |||| || |||| | |||||||||||    
T  39171568 tgaaaatagtattaattagagttataaaaagaaaaaagtaattaatattatattgaaaagttaaatgactcagttatttt 39171489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 33925150 - 33925214
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatatt 135  Q
    ||||||||  |||||||||||||||||||||||| |||||||||  || ||||||||||||||||    
T  33925150 attgaattgaaagttgtgaaagtagtattaattagagttataaaaggaaaaaagtaattaatatt 33925214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 28791349 - 28791288
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaat 132  Q
    |||||||| | ||||||||||||||||||||||| ||||||||   ||||||||||||||||    
T  28791349 attgaattgggagttgtgaaagtagtattaattagagttataattggagaaaagtaattaat 28791288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 44615447 - 44615578
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgac---acttcttttgca 183  Q
    ||||| || ||||||||| |||||||||| | ||||||||||||||||| ||| | || ||||||| | ||||||||||||  ||     || |||||||    
T  44615447 tgaaaataatattaattagagttataaagggggaaaagtaattaatattgtattggaaagtgaaatgactcagttattttagaacttttttttttttgca 44615546  T
Q  184 aatggctcggttattatg-gacggagggagta 214  Q
    | || ||||||||||||| |||||||||||||    
T  44615547 attgactcggttattatgagacggagggagta 44615578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 214
Target Start/End: Original strand, 44790503 - 44790634
Alignment:
Q  86 gtgaaagtagtattaattatagttataaagagagaaa-agtaattaatattatatcgaaaggtgaaataattcagttattttatgacac-ttcttttgca 183  Q
    ||||||||||||||||||| |||||||||| || ||| ||||||||||  | ||| |||| |||||||   | | |||||||  ||||| || |||||||    
T  44790503 gtgaaagtagtattaattagagttataaagggaaaaatagtaattaatgatgtattgaaaagtgaaatggcttaattattttgggacacttttttttgca 44790602  T
Q  184 aatggctcggttattat-ggacggagggagta 214  Q
    ||| |||| |||||||| ||||||||||||||    
T  44790603 aatagctcagttattatgggacggagggagta 44790634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 81 - 166
Target Start/End: Complemental strand, 31132761 - 31132675
Alignment:
Q  81 aagttgtgaaagtagtattaattatagttataa-agagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||||||||||||||||||||||| |||||||| ||  | |||||||||||||||| ||| ||||  |||||| | || ||||||||    
T  31132761 aagttgtgaaagtagtattaattagagttataagaggaaaaaaagtaattaatattgtattgaaaaatgaaatgactccgttatttt 31132675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 14690001 - 14689920
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    |||||||| | ||| |||||||||||||||||||  |||||||   || |||||||||||||||| ||| |||| |||||||    
T  14690001 attgaattgggagtggtgaaagtagtattaattagtgttataattggaaaaaagtaattaatattgtattgaaaagtgaaat 14689920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 31410690 - 31410770
Alignment:
Q  87 tgaaagtagtattaattatagttata-aagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttta 167  Q
    |||||||||||||||||| ||||||| ||| || |||||||||||||||| ||| | || ||||||| | ||||||||||||    
T  31410690 tgaaagtagtattaattaaagttatagaaggga-aaaagtaattaatattgtattggaaagtgaaatgactcagttatttta 31410770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 41726562 - 41726481
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    |||||||| | |||||||||| |||||||||||| ||||||||    | |||||||||||||||| ||| |||| |||||||    
T  41726562 attgaattgggagttgtgaaattagtattaattacagttataattgaaaaaaagtaattaatattgtattgaaaagtgaaat 41726481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 32967359 - 32967489
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacac--ttcttttgcaa 184  Q
    |||||||||||||||||| ||||||||||  | |||||||| ||||| | ||| |||| ||||||| | |  ||||||||   ||||  || ||||||||    
T  32967359 tgaaagtagtattaattagagttataaaggaaaaaaagtaactaatactgtattgaaaagtgaaatgactaggttattttgaaacactttttttttgcaa 32967458  T
Q  185 atggctcggttattat-ggacggagggagta 214  Q
    ||| ||| |||||||| ||||||| ||||||    
T  32967459 atgactcagttattatgggacggatggagta 32967489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 34287145 - 34287240
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||||||||||| |  |||||||| ||||||||| | ||||||||  | |||||| |||||| || ||| |||| ||||||| | |||||||||||    
T  34287145 attgaattagaaatgatgaaagtaatattaattagaattataaaggaaaaaaagtgattaatgttgtattgaaaagtgaaatgactcagttatttt 34287240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 36012053 - 36012119
Alignment:
Q  86 gtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    ||||||||||||||||||| ||||||||   || |||| ||||||||||| ||| |||| |||||||    
T  36012053 gtgaaagtagtattaattagagttataagtggaaaaaaataattaatattgtattgaaaagtgaaat 36012119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 202
Target Start/End: Original strand, 5962555 - 5962676
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtg-aaataattcagttattttatgacac-----ttctttt 180  Q
    ||||| || ||||||||| |||||||||| |  |||||||||||||| | ||| | || ||| |||| | |||||||||||| |||||     || ||||    
T  5962555 tgaaattaatattaattagagttataaaggggaaaaagtaattaataatgtattggaaagtgaaaatgactcagttattttaggacactttttttttttt 5962654  T
Q  181 gcaaatggctcggttattatgg 202  Q
    |||| |||||||||||||||||    
T  5962655 gcaattggctcggttattatgg 5962676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 32231786 - 32231867
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    |||||||| | ||| ||||||||| |||||||||  |||||||   || |||||||||||||||| ||| |||| |||||||    
T  32231786 attgaattgggagtggtgaaagtattattaattagtgttataattggaaaaaagtaattaatattgtattgaaaagtgaaat 32231867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 120 - 214
Target Start/End: Complemental strand, 139025 - 138929
Alignment:
Q  120 aaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttctttt-gcaaatggctcggttattat-ggacggagggagta 214  Q
    |||| ||||||||||| ||| |||| ||||||| | || ||||||||  |||| || |||| ||||||||||| |||||||| ||||||| ||||||    
T  139025 aaaaataattaatattgtattgaaaagtgaaatgactcggttattttgggacattttttttcgcaaatggctcagttattatgggacggatggagta 138929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 2349375 - 2349296
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaag-taattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||||||| ||||||||| ||||||||| ||| ||||| ||||||||||| ||| |||| ||||||| | | |||||||||    
T  2349375 tgaaagtaatattaattagagttataaa-agaaaaaaggtaattaatattgtattgaaacgtgaaatgactaagttatttt 2349296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 33746301 - 33746348
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatatt 135  Q
    ||||| ||||||||||||||||||||||| || |||| |||||||||||    
T  33746301 tgaaaatagtattaattatagttataaag-gaaaaaaataattaatatt 33746348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 2e-23; HSPs: 44)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 18849825 - 18849920
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||||||| ||||||||||||||| ||||||||| |||||||||| || |||||||||||||||| ||| |||| ||||||| | |||||||||||    
T  18849825 attgaattggaagttgtgaaagtaatattaattagagttataaagggaaaaaagtaattaatattttattgaaaagtgaaatgactcagttatttt 18849920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 166
Target Start/End: Original strand, 44020828 - 44020923
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||||||||||| |  ||||||||||||| |||| ||||||||||||| |||||||||||||||| |||||||| || |||| ||||| |||||||    
T  44020828 attgaattagaaatgatgaaagtagtattgattagagttataaagagaaaaaagtaattaatattgtatcgaaaagtaaaatgattcaattatttt 44020923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 89 - 214
Target Start/End: Complemental strand, 48740543 - 48740416
Alignment:
Q  89 aaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgaca-cttcttttgcaaatg 187  Q
    |||||| ||||||||| |||||||||| || |||||||||||||||| | | |||| ||||||| | |||||||||||  ||||  || |||||||||||    
T  48740543 aaagtaatattaattagagttataaagggaaaaaagtaattaatattgttttgaaaagtgaaatgactcagttattttgagacatttttttttgcaaatg 48740444  T
Q  188 gctcggttattatg-gacggagggagta 214  Q
     ||| ||||||||| |||||||||||||    
T  48740443 actcagttattatgagacggagggagta 48740416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 54729565 - 54729644
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||||||||||||||||| |||||||||| || |||||||||||||||| ||| | || ||||||| |||||||||||||    
T  54729565 tgaaagtagtattaattagagttataaagggaaaaaagtaattaatattgtattggaaagtgaaatgattcagttatttt 54729644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 76 - 166
Target Start/End: Complemental strand, 31862830 - 31862740
Alignment:
Q  76 attagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    ||||||||||||||||||||||||||||| |||||||||| || |||| ||||||||||  ||| |||| ||||||| | || ||||||||    
T  31862830 attagaagttgtgaaagtagtattaattagagttataaagggaaaaaaataattaatatcgtattgaaaagtgaaatgactcggttatttt 31862740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 71 - 213
Target Start/End: Original strand, 42024267 - 42024412
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    |||||||| |||||  ||||||||||||||||||||||||||||| || |||| ||||||||  | ||| |||| ||||||| | ||| |||| ||| ||    
T  42024267 attgaattggaagtgatgaaagtagtattaattatagttataaagggaaaaaaataattaatgatgtattgaaaagtgaaatgactcatttatcttagga 42024366  T
Q  171 cacttctt--ttgcaaatggctcggttattat-ggacggagggagt 213  Q
    ||||| ||  ||| ||||| ||| |||||||| |||||||||||||    
T  42024367 cacttttttattgaaaatgactcagttattatgggacggagggagt 42024412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 87 - 200
Target Start/End: Complemental strand, 29644380 - 29644266
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgac-acttcttttgcaaa 185  Q
    ||||||||||||||||||||||||||||  || |||||| ||||||||| ||| |||| |||||||   |||||||||||  ||| | || |||||||||    
T  29644380 tgaaagtagtattaattatagttataaaaggaaaaaagttattaatattgtattgaaaagtgaaatgtctcagttattttgggacaattttttttgcaaa 29644281  T
Q  186 tggctcggttattat 200  Q
    || ||| ||||||||    
T  29644280 tgactcagttattat 29644266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 1825330 - 1825410
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttta 167  Q
    ||||| || ||||||||| ||||||||| ||| |||| ||||||||||||||| |||| ||||||| | ||||||||||||    
T  1825330 tgaaaataatattaattagagttataaaaagaaaaaaataattaatattatattgaaaagtgaaatgactcagttatttta 1825410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 39979805 - 39979725
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttta 167  Q
    |||||||| ||||||||| |||||||||| |  |||||||||||||||| ||| |||| ||||||||| ||| ||||||||    
T  39979805 tgaaagtaatattaattagagttataaaggggaaaaagtaattaatattgtattgaaaagtgaaataactcaattatttta 39979725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 196
Target Start/End: Complemental strand, 41203760 - 41203652
Alignment:
Q  89 aaagtagtattaattatagttataaagagagaaaa-gtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttcttttgcaaatg 187  Q
    |||||||||||||||| |||||||||  || |||| |||||||||||| ||| || | ||||||| | ||||||| ||| ||||| || |||||||||||    
T  41203760 aaagtagtattaattagagttataaaatgaaaaaaagtaattaatattgtattgataagtgaaatgactcagttagtttgtgacattttttttgcaaatg 41203661  T
Q  188 gctcggtta 196  Q
     ||||||||    
T  41203660 actcggtta 41203652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 89 - 211
Target Start/End: Complemental strand, 42544232 - 42544108
Alignment:
Q  89 aaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacac-ttcttttgcaaatg 187  Q
    |||||| ||||||||| ||||||||||  | ||||||| |||||  | ||| |||| ||||||| | ||| |||||||||||||| || ||||| |||||    
T  42544232 aaagtaatattaattagagttataaaggaaaaaaagtagttaatgatgtattgaaaagtgaaatgactcatttattttatgacacttttttttgaaaatg 42544133  T
Q  188 gctcggttattatg-gacggaggga 211  Q
    |||| ||||||||| ||||||||||    
T  42544132 gctcagttattatgagacggaggga 42544108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 49812254 - 49812175
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    ||||| |||||||||||| |||||||||| || |||| ||||||||||| ||| |||| ||||||| | |||||||||||    
T  49812254 tgaaaatagtattaattagagttataaagggaaaaaaataattaatattgtattgaaaagtgaaatgactcagttatttt 49812175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 180
Target Start/End: Complemental strand, 8295056 - 8294963
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttctttt 180  Q
    |||||||||||| ||||| |||||||||| || ||| |||||||||||| ||| |||| ||||||| | || ||||||||  ||||||| ||||    
T  8295056 tgaaagtagtataaattagagttataaagggaaaaaggtaattaatattgtattgaaaagtgaaatgactcggttattttgggacacttttttt 8294963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 25149492 - 25149431
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaat 132  Q
    |||||||| ||||||||||||||||||||||||| ||||||||   || |||||||||||||    
T  25149492 attgaattggaagttgtgaaagtagtattaattagagttataattggaaaaaagtaattaat 25149431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 86 - 166
Target Start/End: Original strand, 35998198 - 35998279
Alignment:
Q  86 gtgaaagtagtattaattatagttataaagagagaaa-agtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    ||||||||||||||||||| |||||||||| || ||| | ||||||||||| |||||||| ||||||| | ||| |||||||    
T  35998198 gtgaaagtagtattaattagagttataaagggaaaaataataattaatattgtatcgaaaagtgaaatgactcaattatttt 35998279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 38977016 - 38976968
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatatt 135  Q
    |||||||||||||||||| |||||||||| || ||||||||||||||||    
T  38977016 tgaaagtagtattaattagagttataaagggaaaaaagtaattaatatt 38976968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 42670437 - 42670517
Alignment:
Q  72 ttgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    ||||||| ||| || |||||||| ||||||||| ||||||||||  | ||| |||||||||||| ||| ||||||||||||    
T  42670437 ttgaattggaaattatgaaagtaatattaattaaagttataaaggaaaaaatgtaattaatattgtattgaaaggtgaaat 42670517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 43335106 - 43335185
Alignment:
Q  88 gaaagtagtattaattatagttataaa-gagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttta 167  Q
    ||||||||||||||||||||| ||||  || | |||||||||||||||| ||| |||| ||||||||| ||||||||||||    
T  43335106 gaaagtagtattaattatagtcataattgata-aaaagtaattaatattgtattgaaaagtgaaataaatcagttatttta 43335185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 162
Target Start/End: Original strand, 22496759 - 22496834
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagtta 162  Q
    |||||||||||||||||| |||||||||| |  |||| |||||||||||||||  ||| || |||| |||||||||    
T  22496759 tgaaagtagtattaattagagttataaaggggaaaaaataattaatattatattaaaaagtaaaatgattcagtta 22496834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 41710226 - 41710356
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttctt--ttgcaa 184  Q
    |||||||| ||||||||| |||||||||| || |||||||||||||  | ||| |||| ||||||||  ||| |||||||  ||||||| ||  ||| ||    
T  41710226 tgaaagtaatattaattagagttataaagggaaaaaagtaattaatgatgtattgaaaagtgaaatagctcacttattttgggacacttttttattgaaa 41710325  T
Q  185 atggctcggttattatg-gacggagggagta 214  Q
    ||| ||| ||||||||| |||||| ||||||    
T  41710326 atgactcagttattatgagacggatggagta 41710356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 49448866 - 49448784
Alignment:
Q  87 tgaaagtagtattaattatagttataa--agagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttta 167  Q
    |||||||||||||||||| ||||||||  | | | |||||||||||||||||||| |||| |||||||   ||||||||||||    
T  49448866 tgaaagtagtattaattagagttataattaaaaaaaaaagtaattaatattatattgaaaagtgaaatggatcagttatttta 49448784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 132
Target Start/End: Complemental strand, 4354478 - 4354428
Alignment:
Q  82 agttgtgaaagtagtattaattatagttataaagagagaaaagtaattaat 132  Q
    ||||||||||||||||||||||||||||||||   ||||||| ||||||||    
T  4354478 agttgtgaaagtagtattaattatagttataattggagaaaaataattaat 4354428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 96 - 202
Target Start/End: Complemental strand, 34021051 - 34020943
Alignment:
Q  96 tattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttctttt--gcaaatggctcgg 193  Q
    ||||||||| |||||||||| || |||| ||||| ||||| ||| |||| ||||||| | ||| |||||||  |||| || ||||  ||||||| |||||    
T  34021051 tattaattagagttataaagggaaaaaaataatttatattgtattgaaaagtgaaatgactcacttattttgagacattttttttttgcaaatgactcgg 34020952  T
Q  194 ttattatgg 202  Q
    |||||||||    
T  34020951 ttattatgg 34020943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 41436506 - 41436441
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    |||||||||||||||||| ||||||||  ||| |||| ||||||||||| ||| |||| |||||||    
T  41436506 tgaaagtagtattaattagagttataattagaaaaaaataattaatattgtattgaaaagtgaaat 41436441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 167
Target Start/End: Complemental strand, 3686036 - 3685956
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttta 167  Q
    |||||||| ||||||||| |||||||||| |  |||| ||||||||||| ||| | || ||||||| | ||||||||||||    
T  3686036 tgaaagtaatattaattagagttataaaggggaaaaaataattaatattgtattggaaagtgaaatgactcagttatttta 3685956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 86 - 214
Target Start/End: Original strand, 39052982 - 39053114
Alignment:
Q  86 gtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgaca----cttcttttg 181  Q
    ||||||||||||||||||| ||||||||| ||  |||| || |||||||||||| |||| |||||||   ||| ||||||| |||||     || |||||    
T  39052982 gtgaaagtagtattaattagagttataaa-aggaaaaaatagttaatattatattgaaaagtgaaatggctcaattattttgtgacattttttttttttg 39053080  T
Q  182 caaatggctcggttattatgg-acggagggagta 214  Q
     ||||| ||| |||||||||| ||||||||||||    
T  39053081 taaatgactcagttattatggaacggagggagta 39053114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 39976472 - 39976603
Alignment:
Q  87 tgaaagtagtattaattatagttataaagag-agaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacactt--cttttgca 183  Q
    |||||||||||||||| |  ||||||||||| | ||||||||||||||||  || ||||  |||||| | |||| ||||||  |||||||   |||||||    
T  39976472 tgaaagtagtattaatcagtgttataaagagaaaaaaagtaattaatattgcattgaaaaatgaaatgactcagatattttgggacactttgtttttgca 39976571  T
Q  184 aatggctcggttattatg-gacggagggagta 214  Q
    |||| ||| ||||||||| ||||||| |||||    
T  39976572 aatgactcagttattatgagacggagtgagta 39976603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 42132854 - 42132774
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaa 151  Q
    |||||||| ||||| ||||||||| |||||||||  |||||||   || |||||||||||||||| ||| |||| ||||||    
T  42132854 attgaattggaagtggtgaaagtaatattaattagtgttataattggaaaaaagtaattaatattgtattgaaatgtgaaa 42132774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 40881275 - 40881354
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    ||||||||||||| |||| |||||||||  || ||||||||||| |||| ||| |||| ||||||| | || ||||||||    
T  40881275 tgaaagtagtatttattagagttataaaaggaaaaaagtaattactattgtattgaaaagtgaaatgactcggttatttt 40881354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 1796308 - 1796350
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataa 113  Q
    |||||||| ||||||||||||||||||| ||||| ||||||||    
T  1796308 attgaattggaagttgtgaaagtagtataaattagagttataa 1796350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 10099791 - 10099833
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataa 113  Q
    |||||||| | ||||||||||||||||||||||| ||||||||    
T  10099791 attgaattgggagttgtgaaagtagtattaattagagttataa 10099833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 113
Target Start/End: Original strand, 29550793 - 29550835
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataa 113  Q
    |||||||| | ||||||||||||||||||||||| ||||||||    
T  29550793 attgaattgggagttgtgaaagtagtattaattagagttataa 29550835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 32559188 - 32559103
Alignment:
Q  87 tgaaagtagtattaattatagttat-aaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgaca 172  Q
    |||||||||||||||||| |||||| |||| ||| ||||||||||||||| ||| |||| || |||| ||||||  |||||| ||||    
T  32559188 tgaaagtagtattaattagagttataaaagggag-aaagtaattaatattgtattgaaaagtaaaatgattcagacattttaagaca 32559103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 93 - 202
Target Start/End: Complemental strand, 33047514 - 33047406
Alignment:
Q  93 tagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacac--ttcttttgcaaatggct 190  Q
    ||||||| |||| ||||||||| |   ||| |||||||||||| ||| |||| ||||||| | |||||||||||  |||||  || ||||||||||||||    
T  33047514 tagtattgattagagttataaaaa---aaatgtaattaatattgtattgaaaagtgaaatgactcagttattttgggacactttttttttgcaaatggct 33047418  T
Q  191 cggttattatgg 202  Q
    |  |||||||||    
T  33047417 caattattatgg 33047406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 203
Target Start/End: Original strand, 34791039 - 34791152
Alignment:
Q  92 gtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgaca--cttcttttgcaaatggc 189  Q
    ||||||||||||| ||||||||||  | |||||||||||||||| |||  ||| || |||| | ||| |||||||| || |   || ||||||||||||     
T  34791039 gtagtattaattagagttataaaggaaaaaaagtaattaatattgtattaaaaagtaaaatgactcaattattttaggataatttttttttgcaaatggt 34791138  T
Q  190 tcggttattatgga 203  Q
    ||| ||||||||||    
T  34791139 tcgattattatgga 34791152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 17237068 - 17237003
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    |||||||||||||||||| ||||||||    | |||| ||||||||||||||| |||| |||||||    
T  17237068 tgaaagtagtattaattagagttataattgaaaaaaattaattaatattatattgaaaagtgaaat 17237003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 26185213 - 26185148
Alignment:
Q  88 gaaagtagtattaattatagttataaagag-agaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    ||||||||||||||||| |||||||||||| | |||| ||||||||  | ||| ||||||||||||    
T  26185213 gaaagtagtattaattagagttataaagagaaaaaaaataattaatgatgtattgaaaggtgaaat 26185148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 38319936 - 38319871
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    ||||||||||||||||||  |||||||   || |||||||||||||||| ||| |||| |||||||    
T  38319936 tgaaagtagtattaattagtgttataattggaaaaaagtaattaatattgtattgaaaagtgaaat 38319871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 42185878 - 42185923
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaat 132  Q
    |||||||||||||||||| |||||||||  || |||||||||||||    
T  42185878 tgaaagtagtattaattagagttataaatggaaaaaagtaattaat 42185923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 144
Target Start/End: Original strand, 47787929 - 47787986
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaa 144  Q
    |||||||||||||||||| |||||||||   | |||||||||||||||| ||| ||||    
T  47787929 tgaaagtagtattaattagagttataaaagaaaaaaagtaattaatattgtattgaaa 47787986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 132
Target Start/End: Complemental strand, 49306628 - 49306567
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaat 132  Q
    |||||||||| |||  |||||||||||||||||| ||||||||||  | |||| ||||||||    
T  49306628 attgaattaggagtgatgaaagtagtattaattagagttataaaggaaaaaaaataattaat 49306567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 22129152 - 22129216
Alignment:
Q  86 gtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaa 150  Q
    ||||||||||||||||||| ||||||||  |   |||||||||||||||| ||| |||| |||||    
T  22129152 gtgaaagtagtattaattagagttataattaagaaaaagtaattaatattgtattgaaaagtgaa 22129216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 139
Target Start/End: Original strand, 25581382 - 25581434
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatat 139  Q
    |||||||| ||||||||| ||||||||  | | ||||||||||||||||||||    
T  25581382 tgaaagtaatattaattagagttataattaaaaaaaagtaattaatattatat 25581434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 152
Target Start/End: Original strand, 37315989 - 37316069
Alignment:
Q  72 ttgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    ||||||| | ||| |||||||||||||||||||  |||||||   || ||| |||||||||||| ||| |||| |||||||    
T  37315989 ttgaattgggagtggtgaaagtagtattaattagtgttataattggaaaaatgtaattaatattgtattgaaaagtgaaat 37316069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 9e-23; HSPs: 36)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 71 - 165
Target Start/End: Original strand, 21296569 - 21296663
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattt 165  Q
    |||||||| ||||||||||||||||||||||||| |||||||||  || |||||||||||||||| ||| |||| ||||||| | ||||||||||    
T  21296569 attgaattggaagttgtgaaagtagtattaattagagttataaaaggaaaaaagtaattaatattgtattgaaaagtgaaatgactcagttattt 21296663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 214
Target Start/End: Complemental strand, 33994682 - 33994553
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttcttt-tgcaaa 185  Q
    ||||||| |||||||||| |||||||||| || |||| || |||||||| ||| |||| ||||||| | |||||||||||  |||| || ||| ||||||    
T  33994682 tgaaagtggtattaattagagttataaagggaaaaaaatatttaatattgtattgaaaagtgaaatgactcagttatttttggacatttttttgtgcaaa 33994583  T
Q  186 tggctcggttatta-tggacggagggagta 214  Q
    |||||| ||||||| | |||||||||||||    
T  33994582 tggctcagttattatttgacggagggagta 33994553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 71 - 180
Target Start/End: Original strand, 54122290 - 54122398
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    |||||||| |||||||||||||||||||| |||| |||||||||  || ||||||||||||| |||||| |||| ||||||| | | |||||||||  ||    
T  54122290 attgaattggaagttgtgaaagtagtattgattagagttataaaaggaaaaaagtaattaat-ttatattgaaaagtgaaatgactaagttattttggga 54122388  T
Q  171 cacttctttt 180  Q
    ||||| ||||    
T  54122389 cacttttttt 54122398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 38600888 - 38601017
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgaca--cttcttttgcaa 184  Q
    |||||||||||||||||| |||||||||  || || ||||||||||||| ||| |||||||||||| | ||| ||||||||  |||   || ||||||||    
T  38600888 tgaaagtagtattaattagagttataaatgga-aagagtaattaatattgtattgaaaggtgaaatgactcaattattttagaacaatttttttttgcaa 38600986  T
Q  185 atggctcggttattat-ggacggagggagta 214  Q
    ||| ||| |||||||| ||||||||||||||    
T  38600987 atgactcagttattatgggacggagggagta 38601017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 39365099 - 39365229
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttctttt--gcaa 184  Q
    ||||| |||||||||||| |||||||||| |  |||||||||||||||| ||| ||||  ||||||   |||||||||||  ||||||| ||||  | ||    
T  39365099 tgaaaatagtattaattagagttataaaggggaaaaagtaattaatattgtattgaaaattgaaatggctcagttattttgggacacttttttttggtaa 39365198  T
Q  185 atggctcggttattat-ggacggagggagta 214  Q
    ||||||| |||||||| ||||||||||||||    
T  39365199 atggctcagttattatgggacggagggagta 39365229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 46786063 - 46786142
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    ||||||||||||||| || |||||||||| || ||||||||||||||||||||  ||| ||||||||  |||||||||||    
T  46786063 tgaaagtagtattaactaaagttataaagcgaaaaaagtaattaatattatattaaaaagtgaaatagctcagttatttt 46786142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 214
Target Start/End: Complemental strand, 51164993 - 51164844
Alignment:
Q  71 attgaattagaagttgtgaaagtagta-ttaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatg 169  Q
    |||||||| | ||| |||||||||||| ||||||| |||||||||| || |||||||||||||||| ||| |||| ||||||| | ||  |||||||||     
T  51164993 attgaatttggagtagtgaaagtagtacttaattagagttataaaggga-aaaagtaattaatattgtattgaaaagtgaaatgactcgattattttata 51164895  T
Q  170 acac-----ttcttttgcaaatggctcggttattat-ggacggagggagta 214  Q
    ||||     || ||||||||||||||  |||||||| ||||||||||||||    
T  51164894 acacttttttttttttgcaaatggctgagttattatgggacggagggagta 51164844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 87 - 180
Target Start/End: Complemental strand, 41031597 - 41031504
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttctttt 180  Q
    |||||||||||||||||| |||||||||  || |||||||||||||||| ||| |||| ||||||| | ||| |||||||  ||||||| ||||    
T  41031597 tgaaagtagtattaattaaagttataaatggaaaaaagtaattaatattgtattgaaaagtgaaatgactcaattattttgcgacacttttttt 41031504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 71 - 152
Target Start/End: Complemental strand, 53051067 - 53050986
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    |||||||| | ||||||||||||||||||||||| ||||||||   |||||||||||||||||||  || |||| |||||||    
T  53051067 attgaattgggagttgtgaaagtagtattaattagagttataattggagaaaagtaattaatattgcattgaaaagtgaaat 53050986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 1334847 - 1334987
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    |||||||| | ||| ||||||||||||||||||| |||||||||| || ||||||||||||||||     |||| ||||||| | ||| ||||||||  |    
T  1334847 attgaattgggagtggtgaaagtagtattaattagagttataaag-gaaaaaagtaattaatatt-----gaaaagtgaaatgactcaattattttagaa 1334940  T
Q  171 ca--cttcttttgcaaatggctcggttattat-ggacggagggagta 214  Q
    ||   || ||||||||||| ||| |||||||| ||||||||||||||    
T  1334941 caacttttttttgcaaatgactcagttattatgggacggagggagta 1334987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 71 - 118
Target Start/End: Original strand, 43639582 - 43639629
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagaga 118  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||    
T  43639582 attgaattggaagttgtgaaagtagtattaattagagttataaagaga 43639629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 54493933 - 54493855
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||||||||||||||||| |||||||||| || |||||||||||||||| ||| |||| |||||||   |||||||||||    
T  54493933 tgaaagtagtattaattagagttataaagggaaaaaagtaattaatattgtat-gaaaagtgaaatggctcagttatttt 54493855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 202
Target Start/End: Complemental strand, 48744250 - 48744133
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgac--acttcttttgcaa 184  Q
    |||||||| ||||||||| ||||||||||||| |||||||||||||||| |||  ||| || |||| | | |||||||||  |||    || ||||||||    
T  48744250 tgaaagtaatattaattagagttataaagagaaaaaagtaattaatattgtattaaaaagtaaaatgacttagttattttgggactttttttttttgcaa 48744151  T
Q  185 atggctcggttattatgg 202  Q
    ||||||| ||||||||||    
T  48744150 atggctcagttattatgg 48744133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 71 - 170
Target Start/End: Original strand, 54845582 - 54845683
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaa--gtaattaatattatatcgaaaggtgaaataattcagttattttat 168  Q
    ||||||||||||||  |||||||||||||||||| ||||||||| ||| ||||   ||||||||||| |||  ||| ||||||| | | |||||||||||    
T  54845582 attgaattagaagtaatgaaagtagtattaattagagttataaatagaaaaaaatataattaatattgtattaaaaagtgaaatgacttagttattttat 54845681  T
Q  169 ga 170  Q
    ||    
T  54845682 ga 54845683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 32023183 - 32023312
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgac-acttcttttgcaaa 185  Q
    |||||||| ||||||||| |||||||||| || |||| ||||||||||| ||| | || ||||||| | |||||||||||| |||   || ||||||||     
T  32023183 tgaaagtaatattaattagagttataaagggaaaaaaataattaatattgtattggaaagtgaaatgactcagttattttaggacttttttttttgcaat 32023282  T
Q  186 tggctcggttattat-ggacggagggagta 214  Q
    || ||| |||||||| ||||| ||||||||    
T  32023283 tgactcagttattatgggacgaagggagta 32023312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 152
Target Start/End: Original strand, 54021524 - 54021604
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    |||||||| | ||| ||||||||||||||||||| | |||||||| || |||| ||||||||||||||| |||| |||||||    
T  54021524 attgaattcggagtggtgaaagtagtattaattagaattataaaggga-aaaattaattaatattatattgaaaagtgaaat 54021604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 8706173 - 8706088
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgaca 172  Q
    |||||||||||||||||| ||||||||  ||| ||||||||| |||||| ||| |||| |||||| |  |||||| ||||| ||||    
T  8706173 tgaaagtagtattaattagagttataattagaaaaaagtaatcaatattgtattgaaaagtgaaacatgtcagtttttttaggaca 8706088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 9058060 - 9057975
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgaca 172  Q
    |||||||||||||||||| ||||||||  ||| ||||||||| |||||| ||| |||| |||||| |  |||||| ||||| ||||    
T  9058060 tgaaagtagtattaattagagttataattagaaaaaagtaatcaatattgtattgaaaagtgaaacatgtcagtttttttaggaca 9057975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 215
Target Start/End: Original strand, 21585476 - 21585623
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    |||| ||| ||||| ||||||||| ||||||||| ||||||||   |  |||| ||||||||||| ||| | || ||||||| | |||||||||||  ||    
T  21585476 attgtattggaagtggtgaaagtaatattaattagagttataattgggaaaaaataattaatattgtattggaaagtgaaatgactcagttattttggga 21585575  T
Q  171 cacttctt--ttgcaaatggctcggttattatgg-acggagggagtag 215  Q
    ||||| ||  ||| ||||| ||| |||||||||| |||||| ||||||    
T  21585576 cacttttttattgaaaatgactcagttattatggaacggagagagtag 21585623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 166
Target Start/End: Complemental strand, 15280630 - 15280551
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    ||||||||||||||||||  ||||||||  || |||||||||||||  | ||| |||| ||||||| ||||| |||||||    
T  15280630 tgaaagtagtattaattagggttataaaaggaaaaaagtaattaatgatgtattgaaaagtgaaattattcacttatttt 15280551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 87 - 214
Target Start/End: Original strand, 30261584 - 30261714
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgaca--cttcttttgcaa 184  Q
    |||||||||||||||||| ||||||||  ||  ||||||||||| |||| ||| |||| |||||||   ||| || ||||  ||||   || ||||||||    
T  30261584 tgaaagtagtattaattagagttataattaggaaaaagtaattattattgtattgaaaagtgaaatgggtcaatttttttgggacaatatttttttgcaa 30261683  T
Q  185 atggctcggttattat-ggacggagggagta 214  Q
    ||||||| |||||||| |||| |||||||||    
T  30261684 atggctcagttattatgggacagagggagta 30261714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 175
Target Start/End: Complemental strand, 49003286 - 49003208
Alignment:
Q  96 tattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacactt 175  Q
    ||||||| | ||||||||||||| |||||||||||||||| ||| |||| || |||| | ||| ||| ||||||||||||    
T  49003286 tattaatgagagttataaagagaaaaaagtaattaatattgtattgaaaagtaaaatgactcactta-tttatgacactt 49003208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 54458400 - 54458507
Alignment:
Q  96 tattaattatagttataaagagagaaaa-gtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttcttttgcaaatggctcggt 194  Q
    |||||||||  |||||||||||| |||| |||||||||||| ||| |||| || |||| | |||||||||||  |||| || ||||||||| |  || ||    
T  54458400 tattaattaaggttataaagagaaaaaaagtaattaatattgtattgaaaagtaaaattactcagttattttgggacaatttttttgcaaacgattcagt 54458499  T
Q  195 tattatgg 202  Q
    ||||||||    
T  54458500 tattatgg 54458507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 32977867 - 32977917
Alignment:
Q  82 agttgtgaaagtagtattaattatagttataaagagagaaaagtaattaat 132  Q
    ||||||||||||||||||||||| ||||||||   ||||||| ||||||||    
T  32977867 agttgtgaaagtagtattaattagagttataattggagaaaaataattaat 32977917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 46194287 - 46194353
Alignment:
Q  86 gtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    |||||||||||||||||||  |||||||   || |||||||||||||||| ||| |||| |||||||    
T  46194287 gtgaaagtagtattaattagtgttataattggaaaaaagtaattaatattgtattgaaaagtgaaat 46194353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 2868599 - 2868514
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgaca 172  Q
    |||||||| ||||||||| |||| |||  ||| |||| ||||||||||| ||| |||| |||||||   |||||||||||| ||||    
T  2868599 tgaaagtaatattaattagagttgtaattagaaaaaaataattaatattgtattgaaaagtgaaatggatcagttattttaggaca 2868514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 112
Target Start/End: Complemental strand, 50736142 - 50736101
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttata 112  Q
    |||||||| ||||| ||||||||||||||||||| |||||||    
T  50736142 attgaattggaagtagtgaaagtagtattaattagagttata 50736101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 50776713 - 50776754
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttata 112  Q
    |||||||| ||||| ||||||||||||||||||| |||||||    
T  50776713 attgaattggaagtagtgaaagtagtattaattagagttata 50776754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Complemental strand, 1923131 - 1923067
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatatt 135  Q
    |||||||| | ||| |||||||||||||||||||  |||||||   || ||||||||||||||||    
T  1923131 attgaattgggagtggtgaaagtagtattaattagtgttataattggaaaaaagtaattaatatt 1923067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 16134486 - 16134533
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatatt 135  Q
    |||||||||||||||||| | |||||||| || ||||||||||||||||    
T  16134486 tgaaagtagtattaattagaattataaag-gaaaaaagtaattaatatt 16134533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 163
Target Start/End: Complemental strand, 26142931 - 26142855
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttat 163  Q
    |||||||||||| || || ||||||||   || |||||||||||||||||||| |||| || |||| | ||||||||    
T  26142931 tgaaagtagtatcaactagagttataagaggaaaaaagtaattaatattatattgaaaagtaaaatgactcagttat 26142855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 115
Target Start/End: Original strand, 32827370 - 32827414
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaag 115  Q
    |||||||||||| |  |||||||||||||||||| ||||||||||    
T  32827370 attgaattagaaatgatgaaagtagtattaattagagttataaag 32827414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 39866635 - 39866683
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatatt 135  Q
    ||||||| |||||||||| |||||||||| |  ||||||||||||||||    
T  39866635 tgaaagtggtattaattagagttataaaggggaaaaagtaattaatatt 39866683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 114 - 166
Target Start/End: Original strand, 43640674 - 43640726
Alignment:
Q  114 agagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    ||||| |||||||||||||||| ||| |||| ||||||| | |||||||||||    
T  43640674 agagaaaaaagtaattaatattgtattgaaaagtgaaatgactcagttatttt 43640726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 135
Target Start/End: Original strand, 44219099 - 44219163
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatatt 135  Q
    |||||||| |||||  ||||| |||||||||||| ||||||||   || ||||||||||||||||    
T  44219099 attgaattggaagtaatgaaaatagtattaattagagttataattggaaaaaagtaattaatatt 44219163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 132
Target Start/End: Complemental strand, 48409624 - 48409564
Alignment:
Q  72 ttgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaat 132  Q
    ||||||| | ||| ||||||||||||||||||| ||||||||   || |||||||||||||    
T  48409624 ttgaattgggagtggtgaaagtagtattaattagagttataattggaaaaaagtaattaat 48409564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 46)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 2219515 - 2219659
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    |||||||| ||||||||||| ||||||||||||| |||||||||| || |||||||||||||||| ||| |||| |||||||  |||| |||||||  ||    
T  2219515 attgaattggaagttgtgaacgtagtattaattagagttataaaggga-aaaagtaattaatattgtattgaaaagtgaaatggttcaattattttggga 2219613  T
Q  171 cactt-cttttgcaaatggctcggttattat-ggacggagggagta 214  Q
    || ||  |||||||||||| ||| ||||||| |||| |||||||||    
T  2219614 caattatttttgcaaatggttcgattattatgggactgagggagta 2219659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 5442381 - 5442287
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||||||| ||||||||||||||| |||||||||||||||||||  || ||||||||||||| |||||| |||| ||||||||  |||||||||||    
T  5442381 attgaattggaagttgtgaaagtaatattaattatagttataaaaggaaaaaagtaattaat-ttatattgaaaagtgaaatagctcagttatttt 5442287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 36784355 - 36784260
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||||||| |||||||||||| || |||||||||||||||||||   | |||||||||||||||| ||| |||| ||||||| | |||||||||||    
T  36784355 attgaatttgaagttgtgaaaataatattaattatagttataaatgaaaaaaagtaattaatattgtattgaaaagtgaaatgactcagttatttt 36784260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 87 - 180
Target Start/End: Complemental strand, 27698837 - 27698744
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttctttt 180  Q
    |||||||| ||||||||| |||||||||| || |||||||||||||||| ||| |||| ||||||| | ||| |||||||| ||||||| ||||    
T  27698837 tgaaagtaatattaattagagttataaagggaaaaaagtaattaatattgtattgaaaagtgaaatgactcaattattttaggacacttttttt 27698744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 11425936 - 11426082
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    |||| ||| ||||| ||||||||||||||||||| ||||||||    | |||||||||||||||| ||| | || ||||||| | |||||||||||| ||    
T  11425936 attgtattggaagtagtgaaagtagtattaattaaagttataattgaaaaaaagtaattaatattgtattggaaagtgaaatgactcagttattttagga 11426035  T
Q  171 cacttctt--ttgcaaatggctcggttattat-ggacggagggagta 214  Q
    ||||| ||  ||| ||||||||| | |||||| ||||||| ||||||    
T  11426036 cacttttttattgaaaatggctccggtattatgggacggaaggagta 11426082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 19533002 - 19533081
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||||||||||||||||| |||||||||| || |||||||||||||||| ||| |||| || |||| | |||||||||||    
T  19533002 tgaaagtagtattaattaaagttataaagggaaaaaagtaattaatattgtattgaaaagtaaaatgactcagttatttt 19533081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 89 - 203
Target Start/End: Original strand, 48242675 - 48242790
Alignment:
Q  89 aaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttta-tgacacttcttttgcaaatg 187  Q
    |||||| ||||||||| ||||||||| ||| |||||||||||||||| ||| |||| ||||||| | | |||||||| |  |  | || |||||||||||    
T  48242675 aaagtaatattaattaaagttataaaaagaaaaaagtaattaatattgtattgaaaagtgaaatgactaagttatttcagagcaattttttttgcaaatg 48242774  T
Q  188 gctcggttattatgga 203  Q
    ||||||||||||||||    
T  48242775 gctcggttattatgga 48242790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 71 - 203
Target Start/End: Original strand, 49494230 - 49494363
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    |||||||||||| |  |||||||| ||||||||| |||||||||| || |||||||||||||| | ||| |||| ||||||| | ||  |||||||  ||    
T  49494230 attgaattagaaatgatgaaagtaatattaattaaagttataaag-gaaaaaagtaattaatagtgtattgaaaagtgaaatgactcgattattttgaga 49494328  T
Q  171 cactt--cttttgcaaatggctcggttattatgga 203  Q
    |||||   |||||||||||||||| ||||||||||    
T  49494329 cactttatttttgcaaatggctcgattattatgga 49494363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 175
Target Start/End: Complemental strand, 17342851 - 17342765
Alignment:
Q  89 aaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacactt 175  Q
    |||||||||||||||| |||||||| || | || ||||||||||||| ||| |||| ||||||||| |||||||||||  |||||||    
T  17342851 aaagtagtattaattagagttataatgaaaaaatagtaattaatattgtattgaaaagtgaaataactcagttattttgagacactt 17342765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 87 - 180
Target Start/End: Complemental strand, 11324273 - 11324180
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttctttt 180  Q
    |||| |||||||||||||||||||||||| || ||||||| |||||  | ||| |||| ||||||| |||||||||||||| | ||||| ||||    
T  11324273 tgaatgtagtattaattatagttataaagggaaaaaagtagttaatgatgtattgaaaagtgaaatgattcagttattttaaggcacttttttt 11324180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 87 - 180
Target Start/End: Complemental strand, 11482294 - 11482201
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacacttctttt 180  Q
    |||| |||||||||||||||||||||||| || ||||||| |||||  | ||| |||| ||||||| |||||||||||||| | ||||| ||||    
T  11482294 tgaatgtagtattaattatagttataaagggaaaaaagtagttaatgatgtattgaaaagtgaaatgattcagttattttaaggcacttttttt 11482201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 28277121 - 28277201
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttta 167  Q
    ||||||| |||||||||| ||||||||||||| |||||||||||||||| |||  |||  |||||| | ||||||||||||    
T  28277121 tgaaagtggtattaattagagttataaagagaaaaaagtaattaatattgtattaaaaaatgaaatgactcagttatttta 28277201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 175
Target Start/End: Complemental strand, 46536365 - 46536277
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacactt 175  Q
    |||||||||||||||||| ||||||| || || ||| |||||||||||| ||| |||| ||||||| | |||||||||||  |||||||    
T  46536365 tgaaagtagtattaattagagttatagagggaaaaatgtaattaatattgtattgaaaagtgaaatgactcagttattttgagacactt 46536277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 52830496 - 52830576
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttta 167  Q
    |||||||| || |||||| | ||||||||||| |||||||||||||||| ||| |||| ||||||| | ||||||||||||    
T  52830496 tgaaagtaatactaattaaaattataaagagaaaaaagtaattaatattgtattgaaaagtgaaatgactcagttatttta 52830576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 30749780 - 30749714
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaata 153  Q
    ||||||||||||||| || ||||||||||||| |||||||||||||||| ||| ||||  |||||||    
T  30749780 tgaaagtagtattaactagagttataaagagaaaaaagtaattaatattgtattgaaaaatgaaata 30749714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 87 - 153
Target Start/End: Complemental strand, 30771231 - 30771165
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaata 153  Q
    ||||||||||||||| || ||||||||||||| |||||||||||||||| ||| ||||  |||||||    
T  30771231 tgaaagtagtattaactagagttataaagagaaaaaagtaattaatattgtattgaaaaatgaaata 30771165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 93 - 166
Target Start/End: Complemental strand, 7787696 - 7787623
Alignment:
Q  93 tagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    ||||||||||||||||||||||| |  |||||||||||||||| ||||||||  ||||||   |||||||||||    
T  7787696 tagtattaattatagttataaaggggaaaaagtaattaatattgtatcgaaaaatgaaatggctcagttatttt 7787623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 95 - 172
Target Start/End: Complemental strand, 49944807 - 49944731
Alignment:
Q  95 gtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgaca 172  Q
    |||||||||| ||||||||| ||| |||||||||||||||| ||| |||||||||||| | || ||||||||| ||||    
T  49944807 gtattaattagagttataaa-agaaaaaagtaattaatattgtattgaaaggtgaaatgactcggttattttaagaca 49944731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 87 - 167
Target Start/End: Original strand, 34877173 - 34877252
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttta 167  Q
    ||||| || ||||||||| |||||||| |||| |||||||||||||||| ||| |||| || |||| ||||||||||||||    
T  34877173 tgaaaataatattaattagagttataatgaga-aaaagtaattaatattgtattgaaaagtaaaatgattcagttatttta 34877252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 164
Target Start/End: Original strand, 7785359 - 7785433
Alignment:
Q  89 aaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatt 164  Q
    |||||||||||||||| |||||||||| || |||| ||||||||||| ||| |||| ||||||| | |||||||||    
T  7785359 aaagtagtattaattagagttataaaggga-aaaaataattaatattgtattgaaaagtgaaatgactcagttatt 7785433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 10370270 - 10370349
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||||||| ||||||||| |||||||||| || |||| ||||||||||| ||| | || ||||||||  |||||||||||    
T  10370270 tgaaagtaatattaattagagttataaagggaaaaaaataattaatattgtattggaaagtgaaatagctcagttatttt 10370349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 78 - 202
Target Start/End: Complemental strand, 8773276 - 8773146
Alignment:
Q  78 tagaagttgtgaaagtagtattaattatagttataaagagagaaaa----gtaattaatattatatcgaaaggtgaaataattcagttattttatgacac 173  Q
    |||||||  |||||||||||||||||| |||||||||  || ||||    |||||||||||| ||| ||||  |||||||  |||||||||||  |||||    
T  8773276 tagaagtgatgaaagtagtattaattagagttataaaaggaaaaaaaaaagtaattaatattctattgaaaaatgaaatagctcagttattttgggacac 8773177  T
Q  174 --ttcttttgcaaatggctcggttattatgg 202  Q
      || ||||||||||| ||| ||||||||||    
T  8773176 tttttttttgcaaatgactcagttattatgg 8773146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 16451661 - 16451591
Alignment:
Q  82 agttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    ||||||||||||||||||||||| ||||||||   || ||||||||||||| || ||| |||| |||||||    
T  16451661 agttgtgaaagtagtattaattaaagttataattggaaaaaagtaattaatgttgtattgaaaagtgaaat 16451591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 82 - 152
Target Start/End: Complemental strand, 16460814 - 16460744
Alignment:
Q  82 agttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    ||||||||||||||||||||||| ||||||||   || ||||||||||||| || ||| |||| |||||||    
T  16460814 agttgtgaaagtagtattaattaaagttataattggaaaaaagtaattaatgttgtattgaaaagtgaaat 16460744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 8327742 - 8327697
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaat 132  Q
    |||||||||||||||||| |||||||||| || |||||||||||||    
T  8327742 tgaaagtagtattaattagagttataaagggaaaaaagtaattaat 8327697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 199
Target Start/End: Original strand, 36467278 - 36467391
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacac-ttcttttgcaaa 185  Q
    ||||| |||||||||||  |||||||||| |  |||||||||||||||| ||| |||| ||||||| | ||||| |||||   |||| || |||||||||    
T  36467278 tgaaaatagtattaatttgagttataaaggggaaaaagtaattaatattgtattgaaaagtgaaatgactcagtcattttgaaacacttttttttgcaaa 36467377  T
Q  186 tggctcggttatta 199  Q
    || ||| |||||||    
T  36467378 tgactcagttatta 36467391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 175
Target Start/End: Original strand, 4466221 - 4466325
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    |||| ||| ||||| ||||||||||||||||||| ||||||||   || |||| ||||||||||| ||| | || ||||||| | ||| |||||||  ||    
T  4466221 attgtattggaagtggtgaaagtagtattaattagagttataattggaaaaaaataattaatattgtattggaaagtgaaatgactcaattattttgaga 4466320  T
Q  171 cactt 175  Q
    |||||    
T  4466321 cactt 4466325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 131
Target Start/End: Complemental strand, 28839364 - 28839321
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaa 131  Q
    ||||||||||||||||||||||||||||| || ||||||||||||    
T  28839364 tgaaagtagtattaattatagttataaaggga-aaaagtaattaa 28839321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 214
Target Start/End: Original strand, 29756209 - 29756358
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataa--agagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttat 168  Q
    |||||||| | ||| |||||||||||||||||||  |||||||   || | |||||||||||||||| ||| |||| |||||||   ||| || || ||     
T  29756209 attgaattgggagtggtgaaagtagtattaattagtgttataattggaaaaaaaagtaattaatattgtattgaaaagtgaaatgggtcaatttttctag 29756308  T
Q  169 gac---acttcttttgcaaatggctcggttattat-ggacggagggagta 214  Q
    |||   | || ||||||||||||||| |||||||| ||||||||||||||    
T  29756309 gacaatattttttttgcaaatggctctgttattatgggacggagggagta 29756358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 38664426 - 38664378
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatatt 135  Q
    |||||||||||||||||| ||||||||| ||| |||| |||||||||||    
T  38664426 tgaaagtagtattaattagagttataaaaagaaaaaaataattaatatt 38664378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 167
Target Start/End: Complemental strand, 51049549 - 51049454
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttta 167  Q
    |||||||| | ||||||||||||||||||||||  | ||||||| | | |||||||||||||||| |||  ||| ||||||||  ||| ||||||||    
T  51049549 attgaattgggagttgtgaaagtagtattaatttaaattataaata-aaaaaagtaattaatattgtattaaaaagtgaaatagctcaattatttta 51049454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 154
Target Start/End: Original strand, 24131467 - 24131550
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataa 154  Q
    |||||||| | ||| |||||||||||||||||||  |||||||   || ||||||||||||||||  || |||| |||||||||    
T  24131467 attgaattgggagtggtgaaagtagtattaattagtgttataattggaaaaaagtaattaatattgcattgaaaagtgaaataa 24131550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 153
Target Start/End: Complemental strand, 31798444 - 31798377
Alignment:
Q  86 gtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaata 153  Q
    ||||||||| |||||||||  |||||||   || |||||||||||||||||||| |||| ||||||||    
T  31798444 gtgaaagtaatattaattagtgttataattggaaaaaagtaattaatattatattgaaaagtgaaata 31798377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 71 - 174
Target Start/End: Complemental strand, 52432353 - 52432250
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    ||||||||  ||||||||||||||  |||||||| |||||||||   | |||||||||||||||| ||| |||| || |||| |   |||||||||| ||    
T  52432353 attgaattgtaagttgtgaaagtaacattaattagagttataaaagaaaaaaagtaattaatattgtattgaaaagtaaaatgacctagttattttagga 52432254  T
Q  171 cact 174  Q
    ||||    
T  52432253 cact 52432250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 2886197 - 2886131
Alignment:
Q  86 gtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    |||||||||||||||||||  |||||||   || |||||||||||||||| ||| |||| |||||||    
T  2886197 gtgaaagtagtattaattagtgttataattggaaaaaagtaattaatattgtattgaaaagtgaaat 2886131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 71 - 153
Target Start/End: Original strand, 36232856 - 36232938
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaata 153  Q
    |||||||| ||| | ||||||||||||||||||| ||||||||   || ||||||||||||| || ||| ||||  |||||||    
T  36232856 attgaattggaaatggtgaaagtagtattaattagagttataattggaaaaaagtaattaatgttttattgaaaactgaaata 36232938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 43895863 - 43895793
Alignment:
Q  96 tattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    ||||||||| |||| |||||||  |||||||||||||||| ||| |||| ||||||| | ||| |||||||    
T  43895863 tattaattagagttgtaaagaggaaaaagtaattaatattgtattgaaaagtgaaatgactcatttatttt 43895793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 3555638 - 3555683
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaat 132  Q
    |||||||||||||||||| |||||||||  || |||||||||||||    
T  3555638 tgaaagtagtattaattagagttataaaaggaaaaaagtaattaat 3555683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 7075471 - 7075512
Alignment:
Q  72 ttgaattagaagttgtgaaagtagtattaattatagttataa 113  Q
    ||||||| | ||||||||||||||||||||||| ||||||||    
T  7075471 ttgaattcggagttgtgaaagtagtattaattagagttataa 7075512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 12267698 - 12267759
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaat 132  Q
    |||||||| | |||||||||||||||||||| || ||||||||   || |||||||||||||    
T  12267698 attgaattgggagttgtgaaagtagtattaactagagttataattggaaaaaagtaattaat 12267759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 152
Target Start/End: Complemental strand, 29225778 - 29225713
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaat 152  Q
    |||||||||||||||||| ||||||||   || ||||||||||| |||| ||| |||| |||||||    
T  29225778 tgaaagtagtattaattagagttataattggaaaaaagtaattattattgtattgaaaagtgaaat 29225713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 71 - 104
Target Start/End: Complemental strand, 45049073 - 45049040
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaatta 104  Q
    |||||||||| |||||||||||||||||||||||    
T  45049073 attgaattaggagttgtgaaagtagtattaatta 45049040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 87 - 132
Target Start/End: Original strand, 45889331 - 45889376
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaat 132  Q
    |||||||||||||||||| |||||||||  || |||||||||||||    
T  45889331 tgaaagtagtattaattagagttataaaaggaaaaaagtaattaat 45889376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 135
Target Start/End: Original strand, 10587664 - 10587712
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatatt 135  Q
    ||||||||||||||||||  |||||||  ||| ||||||||||||||||    
T  10587664 tgaaagtagtattaattagtgttataattagaaaaaagtaattaatatt 10587712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 167
Target Start/End: Complemental strand, 16040118 - 16040022
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttta 167  Q
    |||| ||| ||||| ||||||||| ||||| ||| ||||||||    | |||||||||||||||| ||| | || ||||||| | ||||||||||||    
T  16040118 attgtattggaagtggtgaaagtaatattatttagagttataattgaaaaaaagtaattaatattgtattggaaagtgaaatgactcagttatttta 16040022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 87 - 175
Target Start/End: Original strand, 17724797 - 17724885
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacactt 175  Q
    ||||| |||||||||||| ||||||||| |||  ||| ||||||||||| ||| ||||  |||||| | ||| |||||||  |||||||    
T  17724797 tgaaaatagtattaattagagttataaaaagattaaaataattaatattgtattgaaaaatgaaatgactcaattattttgagacactt 17724885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 71 - 187
Target Start/End: Complemental strand, 229864 - 229749
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatga 170  Q
    |||||||| ||||||||||||||||||||||||| |||||||||| |  |||| ||||||||||| ||| |||| ||||||||| || ||||||||  ||    
T  229864 attgaattggaagttgtgaaagtagtattaattagagttataaaggggaaaaaataattaatattgtattgaaa-gtgaaataactctgttattttggga 229766  T
Q  171 cacttcttttgcaaatg 187  Q
    || || |||||||||||    
T  229765 cattttttttgcaaatg 229749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 71 - 166
Target Start/End: Complemental strand, 230297 - 230203
Alignment:
Q  71 attgaattagaagttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||||||| ||||||||||||||| ||||||||| ||||||||| ||| |||| ||||||||||| ||| |||| ||||||| | |||||||||||    
T  230297 attgaattggaagttgtgaaagtaatattaattagagttataaa-agaaaaaaataattaatattgtattgaaaagtgaaatgactcagttatttt 230203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 87 - 166
Target Start/End: Original strand, 9631 - 9710
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttt 166  Q
    |||||||||||||||||| |||||||||| || || ||||||||||||| ||| |||| ||||||| | || ||||||||    
T  9631 tgaaagtagtattaattagagttataaagggaaaatagtaattaatattgtattgaaaagtgaaattactctgttatttt 9710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 86 - 167
Target Start/End: Complemental strand, 5844 - 5764
Alignment:
Q  86 gtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttatttta 167  Q
    ||||||||||||||||||| |||||||||  || |||| ||||||||||| ||| ||||  | |||||||||| ||||||||    
T  5844 gtgaaagtagtattaattaaagttataaatgga-aaaaataattaatattttattgaaaaataaaataattcaattatttta 5764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 87 - 132
Target Start/End: Complemental strand, 394803 - 394758
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaat 132  Q
    |||||||||||||||||| |||||||||| || |||||||||||||    
T  394803 tgaaagtagtattaattagagttataaagggaaaaaagtaattaat 394758  T

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Target: scaffold0058 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 87 - 135
Target Start/End: Complemental strand, 14481 - 14433
Alignment:
Q  87 tgaaagtagtattaattatagttataaagagagaaaagtaattaatatt 135  Q
    |||||||||||||||||| |||||||||  || ||||||||||||||||    
T  14481 tgaaagtagtattaattagagttataaaaggaaaaaagtaattaatatt 14433  T

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Target: scaffold0045 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 89 - 214
Target Start/End: Complemental strand, 26345 - 26218
Alignment:
Q  89 aaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaataattcagttattttatgacac-ttcttttgcaaatg 187  Q
    |||||| ||||||||| |||||||||  || ||||||||||||||||  ||  ||| |||||||  || |||||||||   |||| || ||||||||||     
T  26345 aaagtaatattaattagagttataaaaggaaaaaagtaattaatatttaattaaaaagtgaaatggtttagttattttgaaacacttttttttgcaaatt 26246  T
Q  188 gctcggttattat-ggacggagggagta 214  Q
    | || |||||||| ||||||||||||||    
T  26245 gttcagttattatgggacggagggagta 26218  T

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Target: scaffold0155 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 8033 - 8102
Alignment:
Q  84 ttgtgaaagtagtattaattatagttataaagagagaaaagtaattaatattatatcgaaaggtgaaata 153  Q
    ||||||||||||||||||||| ||||||||   |  |||||||||| ||||| ||| |||| ||||||||    
T  8033 ttgtgaaagtagtattaattaaagttataattgggaaaaagtaattgatattgtattgaaaagtgaaata 8102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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