View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19838_high_10 (Length: 383)
Name: NF19838_high_10
Description: NF19838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19838_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 60 - 366
Target Start/End: Original strand, 12435667 - 12435981
Alignment:
| Q |
60 |
atctttattataaatagcattatatg--------caacacggaaagccaagccagtgttgtcatctgttgcatctgggatatagaaattacaatctgtca |
151 |
Q |
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| T |
12435667 |
atctttattataaatagcattatatgcaagtatgcaacacggaaagccaagccagtgttgtcatctgttgcatctgggatatagaaattacaatttatca |
12435766 |
T |
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| Q |
152 |
tgtttcccatcatgttgatttcaaactgtgtattacgcttattggttgttagaagattgaggttactggaaggaacatttctttgaatcaatgcatttga |
251 |
Q |
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| T |
12435767 |
tgtttcccatcatgttgatttcaaactgtgtattacgcttattggttgttagaagattgaggttactggaaggaacatttctttgaatcaatgcatttga |
12435866 |
T |
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| Q |
252 |
ttcctcttggtttctgattttccnnnnnnnggtagaatcatggtttagcattttcttttgctcaaagagttgaagaggaagataaaagagtgttttgata |
351 |
Q |
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| T |
12435867 |
ttcctcttggtttctgattttcctttttttggtagaatcatggtttagcattttcttttgctcaaagagtagaagaggaagataaaagagtgttttgata |
12435966 |
T |
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| Q |
352 |
acgaaccacatatat |
366 |
Q |
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| T |
12435967 |
acgaaccacatatat |
12435981 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 80 - 179
Target Start/End: Original strand, 12405474 - 12405573
Alignment:
| Q |
80 |
tatatgcaacacggaaagccaagccagtgttgtcatctgttgcatctgggatatagaaattacaatctgtcatgtttcccatcatgttgatttcaaactg |
179 |
Q |
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| T |
12405474 |
tataggcaacacggaaagataaaccagtggtgtcacctgttgcatcgagaacatagaagttacagtctgtcatgtttcccatcatgttgatttcaaactg |
12405573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 12416970 - 12417040
Alignment:
| Q |
83 |
atgcaacacggaaagccaagccagtgttgtcatctgttgcatctgggatatagaaattacaatctgtcatg |
153 |
Q |
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| T |
12416970 |
atgcaacacggaaagacaaaccagtgctgtcccctgttgagtctgggacatagaaattacaatcagtcatg |
12417040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 83 - 153
Target Start/End: Original strand, 12429030 - 12429100
Alignment:
| Q |
83 |
atgcaacacggaaagccaagccagtgttgtcatctgttgcatctgggatatagaaattacaatctgtcatg |
153 |
Q |
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| T |
12429030 |
atgcaacacggaaagacaaaccagtgctgtcccctgttgagtctgggacatagaaattacaatcagtcatg |
12429100 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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