View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19838_high_17 (Length: 242)
Name: NF19838_high_17
Description: NF19838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19838_high_17 |
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Alignment Details
Target: chr8 (Bit Score: 118; Significance: 3e-60; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 44504362 - 44504479
Alignment:
| Q |
1 |
acatttctaataaagctatttaccccaagaagtagcttttgttcaatgtacaaaattgaatagattgagcttctacgagaagctatagaaatgaactttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44504362 |
acatttctaataaagctatttaccccaagaagtagcttttgttcaatgtacaaaattgaatagattgagcttctacgagaagctatagaaatgaactttt |
44504461 |
T |
|
| Q |
101 |
ggaaaaaattcggagctt |
118 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
44504462 |
ggaaaaaattcggagctt |
44504479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 11899031 - 11898914
Alignment:
| Q |
1 |
acatttctaataaagctatttaccccaagaagtagcttttgttcaatgtacaaaattgaatagattgagcttctacgagaagctatagaaatgaactttt |
100 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11899031 |
acatttctaataaagctatttatcctaagaagtagcttttgttcaatgtacaaaattgaatagattgagcttctacgagaagctatagaaatgaactttt |
11898932 |
T |
|
| Q |
101 |
ggaaaaaattcggagctt |
118 |
Q |
| |
|
|||||||||||||||||| |
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| T |
11898931 |
ggaaaaaattcggagctt |
11898914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 17131896 - 17131780
Alignment:
| Q |
1 |
acatttctaataaagctatttaccccaagaagtagcttttgttcaatgtacaaaattgaatagattgagcttctacgagaagctatagaaatgaactttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17131896 |
acatttctaataaagctatttaccccaagaagtagcttttgttcaatgtacaaaattgaatagattgagcttctacgagaagctatagaaatgaactttt |
17131797 |
T |
|
| Q |
101 |
ggaaaaaattcggagct |
117 |
Q |
| |
|
||||||||||||||||| |
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| T |
17131796 |
ggaaaaaattcggagct |
17131780 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 121 - 241
Target Start/End: Original strand, 32601392 - 32601514
Alignment:
| Q |
121 |
ggcaacctcaccaacccattggacaagaacctaccataaggtcaagtgaatttccatatatgacttctctgttaaacaaaattttctaaccac--atgca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
32601392 |
ggcaacctcaccaacccattggacaagaacctaccataaggtcaagtgaatttccatatatgacttctctgttaaacaaaattttctaaccacatatgca |
32601491 |
T |
|
| Q |
219 |
tatactactatcaaagttcattt |
241 |
Q |
| |
|
||||||||||||||||||||||| |
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| T |
32601492 |
tatactactatcaaagttcattt |
32601514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 125 - 241
Target Start/End: Original strand, 32596809 - 32596927
Alignment:
| Q |
125 |
acctcaccaacccattggacaagaacctaccataaggtcaagtgaatttccatatatgacttctctgttaaacaaaattttctaaccac--atgcatata |
222 |
Q |
| |
|
|||| ||||| |||||||||||||| | | ||||| ||||| ||||||||| ||||| ||||||| |||||||||| ||||||||||| |||| |||| |
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|
| T |
32596809 |
acctaaccaaaccattggacaagaagttgcaataagatcaagagaatttccacatatggcttctctattaaacaaaaatttctaaccacatatgcttata |
32596908 |
T |
|
| Q |
223 |
ctactatcaaagttcattt |
241 |
Q |
| |
|
||||| || |||||||||| |
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|
| T |
32596909 |
ctactgtctaagttcattt |
32596927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 118
Target Start/End: Complemental strand, 9790010 - 9789893
Alignment:
| Q |
1 |
acatttctaataaagctatttaccccaagaagtagcttttgttcaatgtacaaaattgaatagattgagcttctacgagaagctatagaaatgaactttt |
100 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9790010 |
acatttctaataaagctatttatcctaagaagtagcttttgttcaatgtacaaaattgaatagattgagcttctacgagaagctatagaaatgaactttt |
9789911 |
T |
|
| Q |
101 |
ggaaaaaattcggagctt |
118 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
9789910 |
ggaaaaaattcggagctt |
9789893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 3586497 - 3586614
Alignment:
| Q |
1 |
acatttctaataaagctatttaccccaagaagtagcttttgttcaatgtacaaaattgaatagattgagcttctacgagaagctatagaaatgaactttt |
100 |
Q |
| |
|
|||||| |||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||| |
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| T |
3586497 |
acatttttaataaagctatttacccgaagaattagcttttgttcaatgtacaaaattgaataaattgagcttctactagaagctgtagaaatgaactttt |
3586596 |
T |
|
| Q |
101 |
ggaaaaaattcggagctt |
118 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
3586597 |
ggaaaaaattcggagctt |
3586614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 102; Significance: 9e-51; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 118
Target Start/End: Original strand, 31678155 - 31678272
Alignment:
| Q |
1 |
acatttctaataaagctatttaccccaagaagtagcttttgttcaatgtacaaaattgaatagattgagcttctacgagaagctatagaaatgaactttt |
100 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |
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| T |
31678155 |
acatttctaataaagctatttacccgaagaagtagcttttgtttaatgtacaaaattgaatagattgagcttctacaagaagctgtagaaatgaactttt |
31678254 |
T |
|
| Q |
101 |
ggaaaaaattcggagctt |
118 |
Q |
| |
|
|||||||||||||||||| |
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|
| T |
31678255 |
ggaaaaaattcggagctt |
31678272 |
T |
|
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