View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19838_high_5 (Length: 509)
Name: NF19838_high_5
Description: NF19838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19838_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 216 - 495
Target Start/End: Complemental strand, 50458107 - 50457828
Alignment:
| Q |
216 |
acaattgtaaattataatttgaatggcactcagaatgagtaaataaatggaaggtgttagaataacaacaaacagtgtttatatacacaaacttaccatt |
315 |
Q |
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| T |
50458107 |
acaattgcaaattataatttgaatggcactcagaatgagtaaataaatggaaggtgttagaataacagcaaacagtgcttatctacacaaacttaccatt |
50458008 |
T |
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| Q |
316 |
aaaaataacacaaatacaaaacgaggggcatagaagaatctcttgattttctaaatcacgccttaaatactgaaaacccacacattcaggtctcattgaa |
415 |
Q |
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| T |
50458007 |
aagaataacacaaatacaaaacgaggggcatagaagaatctcttgattttctaaatcacgccttaaatactgaaaacccacacattcaggtctcattgaa |
50457908 |
T |
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| Q |
416 |
agattactttagacctcattttttcaactaagaagcaaaacaaaaggaagacagtccattagatgtcagggtagatagtg |
495 |
Q |
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| T |
50457907 |
aaattactttagacctcattttttcaactaagaagcaaaacaaaaggaagacagtccattagatgtcagggtagttagtg |
50457828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 223 - 256
Target Start/End: Original strand, 33614600 - 33614633
Alignment:
| Q |
223 |
taaattataatttgaatggcactcagaatgagta |
256 |
Q |
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| T |
33614600 |
taaattatattttgaatggcactcagaatgagta |
33614633 |
T |
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