View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19838_low_1 (Length: 748)
Name: NF19838_low_1
Description: NF19838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19838_low_1 |
 | |
|
| [»] scaffold0361 (1 HSPs) |
| | |
|
| [»] scaffold0001 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 392 - 735
Target Start/End: Complemental strand, 10536251 - 10535908
Alignment:
| Q |
392 |
actttaccatttcaagtccttacatttctttgatccatgattgtgcgcttgtaaccttgaacctatcaattagaaaccttttaagaatctaactcgaatc |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10536251 |
actttaccatttcaagtccttacatttctttgatccatgattgtgcgcttgtaaccttgaacctatcaattagaaaccttttaagaatctaactcgaatc |
10536152 |
T |
|
| Q |
492 |
ctatgttgacctatcaagttcatttgttaaaggaaaatattttccggacaacacgcccaacaggacatttgcttgagatagttggtgtctggtttctcgt |
591 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
10536151 |
ctatgttgacctatcaagttcatttgttaaaggaaaatattttccggacaacacgcccaacaggacatttgcttgagatagttggtgtccggtttctcgt |
10536052 |
T |
|
| Q |
592 |
tatgagaaacatacgttcatataaaatagagtaaattacaccctactctcttaagaaaagtttgagtcgcactcacatcccctcatgtgttaaaatatac |
691 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10536051 |
tatgagaaacatacgttcatataaaatagagtaaattacaccctactctcttaagaaaagtttgagtcgcactcacatcccctcatgtgttaaaatatac |
10535952 |
T |
|
| Q |
692 |
actctcttccttgaaaagtaaaatatttatgcctctcccctatg |
735 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10535951 |
actcccttccttgaaaagtaaaatatttatgcctctcccctatg |
10535908 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 16 - 291
Target Start/End: Complemental strand, 10536637 - 10536362
Alignment:
| Q |
16 |
agaaacttcagttggaaatgtctagtcaaacattttgagtgtaattatttcgtagcctgttgtttgaagattcataagtaacgtctagagttacttgaaa |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10536637 |
agaaacttcagttggaaatgtctagtcaaacattttgagtgtaattatttcgtagcctgttgtttgaagattcataagtaacgtctagagttacttgaaa |
10536538 |
T |
|
| Q |
116 |
tattttaaattgctcaacttctaaaaactgtcgtatgaagagtatccaagaaattttcaaacttcatgcaaaagagtttatctttgttcgacaaaacaac |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
10536537 |
tattttaaattgctcaacttctaaaaactgtcgtatgaagagtatccaagaaattttcaaacttcatgcaaaagagtttatctttgttcgacaaaacagc |
10536438 |
T |
|
| Q |
216 |
acatactagatacccaccctcacataataacatttttactatgtttgaaagaacgatgtatgaaactcaaatatct |
291 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10536437 |
gcatactagatacccaccctcacataataacatttttactatgtttgaaagaacgatgtatgaaactcaaatatct |
10536362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 393 - 576
Target Start/End: Complemental strand, 10529389 - 10529206
Alignment:
| Q |
393 |
ctttaccatttcaagtccttacatttctttgatccatgattgtgcgcttgtaaccttgaacctatcaattagaaaccttttaagaatctaactcgaatcc |
492 |
Q |
| |
|
|||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||| |||||| |
|
|
| T |
10529389 |
ctttaccatttcaagtccctgcatttctttgatccatgattgtgcgcttgtaaccttaaacctatcaattagaaacctttaaagaatctaacttgaatcc |
10529290 |
T |
|
| Q |
493 |
tatgttgacctatcaagttcatttgttaaaggaaaatattttccggacaacacgcccaacaggacatttgcttgagatagttgg |
576 |
Q |
| |
|
|| |||||||| || ||||||||||||||||||||||||||||| ||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
10529289 |
taagttgacctttcgagttcatttgttaaaggaaaatattttcccaacaacacacccaacatgacatttgcttgagatagttgg |
10529206 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 568 - 632
Target Start/End: Complemental strand, 10529018 - 10528954
Alignment:
| Q |
568 |
gatagttggtgtctggtttctcgttatgagaaacatacgttcatataaaatagagtaaattacac |
632 |
Q |
| |
|
||||||||||||| ||||||| |||||||||||||| ||||||||||| ||| |||||||||||| |
|
|
| T |
10529018 |
gatagttggtgtcaggtttctagttatgagaaacatgcgttcatataatataaagtaaattacac |
10528954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 715
Target Start/End: Complemental strand, 14335728 - 14335691
Alignment:
| Q |
679 |
tgttaaaatatacactctc-ttccttgaaaagtaaaat |
715 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
14335728 |
tgttaaaatatacactctcattccttgaaaagtaaaat |
14335691 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 619 - 715
Target Start/End: Complemental strand, 20260084 - 20259987
Alignment:
| Q |
619 |
agagtaaattacaccctactctcttaagaaaagtttgagtcgcactcacatcccctcatgtgttaaaatatacact-ctcttccttgaaaagtaaaat |
715 |
Q |
| |
|
|||||||||||||| ||| ||||||||| |||||| | |||||||||||||| | |||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
20260084 |
agagtaaattacacttccctcccttaagaaatgtttgaattaaactcacatcccctcttatgttaaaatatacactcctctcccttgaaaagtaaaat |
20259987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 619 - 715
Target Start/End: Original strand, 12409406 - 12409503
Alignment:
| Q |
619 |
agagtaaattacaccctactctcttaagaaaagtttgagtcgcactcacatcccctcatgtgttaaaatatacactctcttcc-ttgaaaagtaaaat |
715 |
Q |
| |
|
|||||||||||||| | ||| | ||||| ||| |||| || ||||| | ||||||| | ||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
12409406 |
agagtaaattacactcccctcccctaagagaagcttgaatcacactcccctcccctcctatgttaaaatatacactctcctccattgaaaagtaaaat |
12409503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 715
Target Start/End: Original strand, 34793915 - 34793952
Alignment:
| Q |
679 |
tgttaaaatatacact-ctcttccttgaaaagtaaaat |
715 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
34793915 |
tgttaaaatatacacttctcttccttgaaaagtaaaat |
34793952 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 669 - 734
Target Start/End: Original strand, 1262443 - 1262509
Alignment:
| Q |
669 |
tcccctcatgtgttaaaatatacactctcttc-cttgaaaagtaaaatatttatgcctctcccctat |
734 |
Q |
| |
|
||||||| | ||||||||||||||||||| || ||||||||||||||| | || |||||||||||| |
|
|
| T |
1262443 |
tcccctcttatgttaaaatatacactctcctctcttgaaaagtaaaatttatactcctctcccctat |
1262509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0361 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0361
Description:
Target: scaffold0361; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 618 - 695
Target Start/End: Complemental strand, 17230 - 17153
Alignment:
| Q |
618 |
tagagtaaattacaccctactctcttaagaaaagtttgagtcgcactcacatcccctcatgtgttaaaatatacactc |
695 |
Q |
| |
|
||||||||||||||| | |||| ||||| ||| |||| | ||||||||||||||| | ||||||||||||||||| |
|
|
| T |
17230 |
tagagtaaattacactcccctcttctaagagaagcttgaattacactcacatcccctcttatgttaaaatatacactc |
17153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 679 - 715
Target Start/End: Complemental strand, 185205 - 185168
Alignment:
| Q |
679 |
tgttaaaatatacactctc-ttccttgaaaagtaaaat |
715 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
185205 |
tgttaaaatatacactctccttccttgaaaagtaaaat |
185168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 667 - 715
Target Start/End: Original strand, 28970872 - 28970921
Alignment:
| Q |
667 |
catcccctcatgtgttaaaatatacactct-cttccttgaaaagtaaaat |
715 |
Q |
| |
|
||||||||| | |||||||||||||||||| || |||||||||||||||| |
|
|
| T |
28970872 |
catcccctcctatgttaaaatatacactctcctcccttgaaaagtaaaat |
28970921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University