View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19838_low_10 (Length: 416)
Name: NF19838_low_10
Description: NF19838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19838_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 64; Significance: 7e-28; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 109 - 335
Target Start/End: Complemental strand, 34821448 - 34821221
Alignment:
| Q |
109 |
aataagaagatccgtaatggcgtgaggattatatggcatgtcgcgatttggaacatttggaaagcgaggaatgattttatatttaacaatgctgtcatac |
208 |
Q |
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| T |
34821448 |
aataaaaagattcgtaagggagtgaggcttatttggcacgccgcgatttggagcatatggaaagcgaggaatgatattatttttaacaatgctgttttag |
34821349 |
T |
|
| Q |
209 |
atactgaagagttgttagaatcaattaaggttttatcttggaggtggtgtttggggagattgaattcgccggcgtgcttgttttacgagtggatttggaa |
308 |
Q |
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| T |
34821348 |
attttgaggcactgttggaatcaataaaggttttgtggtggaggtggtgtttaggtcgattggatgtgccgtcttgtttgttttacgaatggagctggaa |
34821249 |
T |
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| Q |
309 |
tccgaagga-ttgtttgatgcggtgatg |
335 |
Q |
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| T |
34821248 |
tccaaaggatttgtttgatgcggtgatg |
34821221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 81 - 335
Target Start/End: Complemental strand, 38185520 - 38185266
Alignment:
| Q |
81 |
gtgggaatgttggaatgacgcggcatctaataagaagatccgtaatggcgtgaggattatatggcatgtcgcgatttggaacatttggaaagcgaggaat |
180 |
Q |
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| T |
38185520 |
gtgggaatgttggaattgagcggtttataataaaaagatttgtaagggagtgaggcttatttggcatgccgccatttggagcatatggaaagctaggaat |
38185421 |
T |
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| Q |
181 |
gattttatatttaacaatgctgtcatacatactgaagagttgttagaatcaattaaggttttatcttggaggtggtgtttggggagattgaattcgccgg |
280 |
Q |
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| T |
38185420 |
gatataacttttaataatgcagtgttggattgtgaggcattgctggaatctattaaggtgttggcctggaggtggtgttttggtagaataaacttgccgg |
38185321 |
T |
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| Q |
281 |
cgtgcttgttttacgagtggatttggaatccgaaggattgtttgatgcggtgatg |
335 |
Q |
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| T |
38185320 |
catgtttgttttacgagtggaattggaatccgaaggaatgcttgttgcggtgatg |
38185266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 235 - 333
Target Start/End: Original strand, 53562335 - 53562433
Alignment:
| Q |
235 |
aaggttttatcttggaggtggtgtttggggagattgaattcgccggcgtgcttgttttacgagtggatttggaatccgaaggattgtttgatgcggtga |
333 |
Q |
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| T |
53562335 |
aaggttttgtcttggaggtggagtttgggaagattaaagttgccggcgtttttgttctacgagtggaagtggaatcccaaggactgtttgatgcggtga |
53562433 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 8 - 81
Target Start/End: Original strand, 6917848 - 6917921
Alignment:
| Q |
8 |
tgagaagaacaaggttacatggtcgtttccaagatcaatggtaaaggttaaaaacttgaagtaatggtaatttg |
81 |
Q |
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| T |
6917848 |
tgagaacaacaaggttacatggtcatttccaagatcaacggtaaaggttaaaaacttgaagtaatggtaatttg |
6917921 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 233 - 335
Target Start/End: Complemental strand, 22153664 - 22153562
Alignment:
| Q |
233 |
ttaaggttttatcttggaggtggtgtttggggagattgaattcgccggcgtgcttgttttacgagtggatttggaatccgaaggattgtttgatgcggtg |
332 |
Q |
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||||||| || ||||||||||| | |||||| || |||||||||| ||||| |||||||| ||||||| |||||||||||||| ||||||| ||||||| |
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| T |
22153664 |
ttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtttgtttgttgcggtg |
22153565 |
T |
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| Q |
333 |
atg |
335 |
Q |
| |
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||| |
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| T |
22153564 |
atg |
22153562 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 233 - 335
Target Start/End: Complemental strand, 22209579 - 22209477
Alignment:
| Q |
233 |
ttaaggttttatcttggaggtggtgtttggggagattgaattcgccggcgtgcttgttttacgagtggatttggaatccgaaggattgtttgatgcggtg |
332 |
Q |
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||||||| || ||||||||||| | |||||| || |||||||||| ||||| |||||||| ||||||| |||||||||||||| ||||||| ||||||| |
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| T |
22209579 |
ttaaggtgttgtcttggaggtgatttttgggtaggttgaattcgcacgcgtgtttgttttatgagtggaattggaatccgaaggtttgtttgttgcggtg |
22209480 |
T |
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| Q |
333 |
atg |
335 |
Q |
| |
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||| |
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| T |
22209479 |
atg |
22209477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 44; Significance: 6e-16; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 226 - 321
Target Start/End: Original strand, 1557362 - 1557457
Alignment:
| Q |
226 |
gaatcaattaaggttttatcttggaggtggtgtttggggagattgaattcgccggcgtgcttgttttacgagtggatttggaatccgaaggattgt |
321 |
Q |
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|||||||||||||| || || ||||||||||||||||| ||||||| | ||| || || ||||||||||| |||| ||||||||||||| ||||| |
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| T |
1557362 |
gaatcaattaaggtattgtcgtggaggtggtgtttgggtagattgagcttgccagcttgtttgttttacgaatggaattggaatccgaagaattgt |
1557457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 233 - 335
Target Start/End: Original strand, 4903893 - 4903995
Alignment:
| Q |
233 |
ttaaggttttatcttggaggtggtgtttggggagattgaattcgccggcgtgcttgttttacgagtggatttggaatccgaaggattgtttgatgcggtg |
332 |
Q |
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| T |
4903893 |
ttaaggtgttgtcttggagatggtttttgggtaggttgaattcgtacgcgtttttgttttatgagtggaattggaatctgaaggattgtttgttgcggtg |
4903992 |
T |
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| Q |
333 |
atg |
335 |
Q |
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||| |
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| T |
4903993 |
atg |
4903995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 109 - 182
Target Start/End: Original strand, 1557245 - 1557318
Alignment:
| Q |
109 |
aataagaagatccgtaatggcgtgaggattatatggcatgtcgcgatttggaacatttggaaagcgaggaatga |
182 |
Q |
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| T |
1557245 |
aataaaaagattcggaagggtgtgaggcttatttggcatgccaccatttggaacatttggaaagcaaggaatga |
1557318 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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