View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19838_low_13 (Length: 362)
Name: NF19838_low_13
Description: NF19838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19838_low_13 |
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Alignment Details
Target: chr1 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 344
Target Start/End: Complemental strand, 28328912 - 28328569
Alignment:
| Q |
1 |
ccttatgctttaatattcaattaattgttgcttataacacgtattgaactgaagcaatgattatttagcctgctctcagtgcctcattacattctctaaa |
100 |
Q |
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| T |
28328912 |
ccttatgctttaatattcaattaatttttgtttatagcacgtattgaactgaagcaatgattatttagcctgctctcagtgcctcattacattctctaaa |
28328813 |
T |
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| Q |
101 |
tnnnnnnngaaaataaagtctatacatatcggaataacataaccttgtataagaaatatcttacagaatttaggttataaccatgtttacttgccatagt |
200 |
Q |
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| T |
28328812 |
taaaaaaagaaaataaagtctatacatatcggaataacataaccttgtataagaaatatcttacagaatttaggttataaccatgtttacttgccatagt |
28328713 |
T |
|
| Q |
201 |
ctcagtgactcaataaaatttcaaaattagcaaaaatgtgaacgaaacatcaactaaaaaactcctccaaacatggagacaaatgctgtctaataagggt |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28328712 |
ctcagtgtctcaataaaatttcaaaattagcaaaaatgtgaacgaaacatcaactaaaaaactcctccaaacatggagacaaatgctgtctaataagggt |
28328613 |
T |
|
| Q |
301 |
tagtttccagagttgaacaagaactaagtagaatacgctcaaag |
344 |
Q |
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| T |
28328612 |
tagtttccagagttgaacaagaactaagtagaatacgctcaaag |
28328569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 211 - 344
Target Start/End: Complemental strand, 28332766 - 28332633
Alignment:
| Q |
211 |
caataaaatttcaaaattagcaaaaatgtgaacgaaacatcaactaaaaaactcctccaaacatggagacaaatgctgtctaataagggttagtttccag |
310 |
Q |
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||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||| |
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| T |
28332766 |
caataaaatttcaaaataagcaaaaatgtgaatgaaacatcaactaaaaaactcctccaaacatggagacagatgctgtctaataaggtttagtttccag |
28332667 |
T |
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| Q |
311 |
agttgaacaagaactaagtagaatacgctcaaag |
344 |
Q |
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| T |
28332666 |
agttgaacaagaacgaagaaaaatacgctcaaag |
28332633 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 270
Target Start/End: Original strand, 29141188 - 29141247
Alignment:
| Q |
211 |
caataaaatttcaaaattagcaaaaatgtgaacgaaacatcaactaaaaaactcctccaa |
270 |
Q |
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|||| ||||||||||||||||||||||||||| ||||||| | |||||||| |||||||| |
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| T |
29141188 |
caattaaatttcaaaattagcaaaaatgtgaatgaaacattatctaaaaaattcctccaa |
29141247 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 305
Target Start/End: Complemental strand, 1062748 - 1062654
Alignment:
| Q |
211 |
caataaaatttcaaaattagcaaaaatgtgaacgaaacatcaactaaaaaactcctccaaacatggagacaaatgctgtctaataagggttagtt |
305 |
Q |
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| T |
1062748 |
caataaagtttcaaaattaataaaaacatgaatgaaacattaactaagaaactactccagacttggagacagattttgtatgataagggttagtt |
1062654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 45 - 94
Target Start/End: Original strand, 29948184 - 29948235
Alignment:
| Q |
45 |
tgaactgaagcaatgattatttagcct--gctctcagtgcctcattacattc |
94 |
Q |
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|||| |||||||||||||||| ||||| ||||||||||||||| ||||||| |
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| T |
29948184 |
tgaagtgaagcaatgattattaagccttagctctcagtgcctcactacattc |
29948235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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