View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19838_low_14 (Length: 361)
Name: NF19838_low_14
Description: NF19838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19838_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 68 - 345
Target Start/End: Complemental strand, 32601392 - 32601114
Alignment:
| Q |
68 |
cttattttctttcatccaaccgaaagtttgaaatcccctacacctaagctatttttctgctgttagtaaggtttccttgatctaatttgtttctgtgatg |
167 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32601392 |
cttattttctttcatccaactgaaagtttgaaatcccctacacctaagctatttttctgctgttagtaaggtttccttgatctaatttgtttatgtgatg |
32601293 |
T |
|
| Q |
168 |
tgcac-tttgactttgcattatttacattgtttttctctcccatcattacatgtgtttttccatcatttgatcctatagatgctccgaaacaaacaagta |
266 |
Q |
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||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32601292 |
tgcacgtttgactttgcattattcacattgtttttctctcccatcattacatgtgtttttccatcatttgatcctatagatgctccgaaacaaacaagta |
32601193 |
T |
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| Q |
267 |
ctcttaatagtcaaagtgaatgcaacgaccttactatcaagactcctaatcaacgtacccagctttccacagatgtagt |
345 |
Q |
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| T |
32601192 |
ctcttaatagtcaaagtgaatgcaacgaccttactatcaagactcctaatcaacgtacccagctttccacagatgtagt |
32601114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 68 - 343
Target Start/End: Complemental strand, 32596805 - 32596530
Alignment:
| Q |
68 |
cttattttctttcatccaaccgaaagtttgaaatcccctacacctaagctatttttctgctgttagtaaggtttccttgatctaatttgtttctgtgatg |
167 |
Q |
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|||||||||||||| ||||| ||||||||||||||| ||||||| ||||||||||||| |||||||| |||||||||||||| |||||||| ||||||| |
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| T |
32596805 |
cttattttctttcagccaactcaaagtttgaaatcccttacacctgagctatttttctgttgttagtatggtttccttgatctcatttgtttgtgtgatg |
32596706 |
T |
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| Q |
168 |
tgcactttgactttgcattatttacattgtttttctctcccatcattacatgtgtttttccatcatttgatcctatagatgctccgaaacaaacaagtac |
267 |
Q |
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| T |
32596705 |
tccactttagctatgcattattcacattgtttttgtctcccatcattacaggtatgtttccatcatttgatcctatggatgttccggaacaagcaagtac |
32596606 |
T |
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| Q |
268 |
tcttaatagtcaaagtgaatgcaacgaccttactatcaagactcctaatcaacgtacccagctttccacagatgta |
343 |
Q |
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|||| |||||||||||||||||||||| || ||| |||| ||| |||||| ||||||||||||||||||||||| |
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| T |
32596605 |
tcttcatagtcaaagtgaatgcaacgatctcgttattaagagtcccaatcaatgtacccagctttccacagatgta |
32596530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 17131893 - 17131961
Alignment:
| Q |
1 |
atgtgtttggccctactttctccttataaggagaagagaagcctaaaaaagcttggccaaacaagctct |
69 |
Q |
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| T |
17131893 |
atgtgtttggccctactttctccttataaggagaagagaagcccaaaaaagcttggccaaacaagctct |
17131961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 3586500 - 3586432
Alignment:
| Q |
1 |
atgtgtttggccctactttctccttataaggagaagagaagcctaaaaaagcttggccaaacaagctct |
69 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
3586500 |
atgtgtttggccctactttctccttataaggagaagagaagcccaaaaaagcttggccaaacaagctct |
3586432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 9790007 - 9790067
Alignment:
| Q |
1 |
atgtgtttggccctactttctccttataaggagaagagaagcctaaaaaagcttggccaaa |
61 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
9790007 |
atgtgtttggccctactttctccttataaggagaagagaagcccaaaaaagcttggccaaa |
9790067 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 44504365 - 44504295
Alignment:
| Q |
1 |
atgtgtttggccctactttctccttataaggagaagagaagcctaaaaaagcttggccaaacaagctctta |
71 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |
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| T |
44504365 |
atgtgtttggccctactttctccttataaggagaagagaagcccaaaaaagcttagccaaacaagctctta |
44504295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 11899028 - 11899088
Alignment:
| Q |
1 |
atgtgtttggccctactttctccttataaggagaagagaagcctaaaaaagcttggccaaa |
61 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11899028 |
atgtgtttggccctactttctccttataaggagaagagaagcccaaaaaagcttggccaaa |
11899088 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 1 - 71
Target Start/End: Complemental strand, 31678158 - 31678088
Alignment:
| Q |
1 |
atgtgtttggccctactttctccttataaggagaagagaagcctaaaaaagcttggccaaacaagctctta |
71 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
31678158 |
atgtgtttggccctactttctccttataaggagaatagaagcccaaaaaagcttggccaaacaagctctta |
31678088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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