View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19838_low_19 (Length: 250)
Name: NF19838_low_19
Description: NF19838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19838_low_19 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 17 - 250
Target Start/End: Complemental strand, 15784046 - 15783813
Alignment:
| Q |
17 |
aaatggtaagtgtcaaaggattatcaaacaagtgtagataaagatactcgacgcggagtcctgttgcagcttcaatccatttgtccatagtgaaacaatc |
116 |
Q |
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| T |
15784046 |
aaatggtaagtgtcaaaggattttcaaacaagtgtagataaagatactcgacgcggagtcctgttgcagcttcaatccatttgtccatattgaaacaatc |
15783947 |
T |
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| Q |
117 |
agcctcagcatcccagaggattgaacaacacgtgagtttaaaagatttgagggtacggtcctgagagcgtggggaaaacataacggcatccaacatttga |
216 |
Q |
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| T |
15783946 |
aacattagcatcccagaggattgaacaacacgtgagtttaaaagatttgtgggtactgtcctgagagcgtggggaaaacataacggcatccaacatttga |
15783847 |
T |
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| Q |
217 |
cgaaactgaatcaagtccttttcatttttcacgc |
250 |
Q |
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| T |
15783846 |
cggaactgaatcaagtccttttcatttttcacgc |
15783813 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 19970455 - 19970524
Alignment:
| Q |
180 |
agagcgtggggaaaacataacggcatccaacatttgacgaaactgaatcaagtccttttcatttttcacg |
249 |
Q |
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| T |
19970455 |
agagcgtggggagaacataacggcattcaacatttgatggaactgaatctgttcctttacattgttcacg |
19970524 |
T |
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