View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19838_low_4 (Length: 558)

Name: NF19838_low_4
Description: NF19838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19838_low_4
NF19838_low_4
[»] chr7 (4 HSPs)
chr7 (229-541)||(5975597-5975909)
chr7 (17-60)||(5975394-5975437)
chr7 (227-267)||(38758268-38758308)
chr7 (133-186)||(5975510-5975564)
[»] chr3 (11 HSPs)
chr3 (14-60)||(13645214-13645260)
chr3 (133-191)||(1677127-1677186)
chr3 (14-60)||(1677259-1677305)
chr3 (205-267)||(3149330-3149392)
chr3 (228-332)||(55196577-55196682)
chr3 (14-62)||(26538698-26538746)
chr3 (133-195)||(26538804-26538867)
chr3 (232-267)||(27662566-27662601)
chr3 (14-60)||(55196852-55196898)
chr3 (133-195)||(13645335-13645399)
chr3 (227-267)||(26538899-26538939)
[»] chr8 (3 HSPs)
chr8 (228-332)||(7274603-7274707)
chr8 (14-60)||(7274388-7274434)
chr8 (232-268)||(45447073-45447109)
[»] chr4 (6 HSPs)
chr4 (133-332)||(20945864-20946064)
chr4 (227-267)||(11148418-11148458)
chr4 (14-60)||(20946137-20946183)
chr4 (229-267)||(41245926-41245964)
chr4 (228-332)||(2671544-2671649)
chr4 (227-267)||(34539749-34539789)
[»] chr2 (4 HSPs)
chr2 (222-267)||(28167276-28167321)
chr2 (14-60)||(5696106-5696152)
chr2 (205-268)||(44906064-44906127)
chr2 (15-55)||(30546032-30546072)
[»] chr5 (1 HSPs)
chr5 (227-267)||(6535593-6535633)
[»] chr1 (2 HSPs)
chr1 (14-60)||(43882330-43882376)
chr1 (227-267)||(13222981-13223021)
[»] chr6 (1 HSPs)
chr6 (217-267)||(1134208-1134258)


Alignment Details
Target: chr7 (Bit Score: 240; Significance: 1e-132; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 240; E-Value: 1e-132
Query Start/End: Original strand, 229 - 541
Target Start/End: Original strand, 5975597 - 5975909
Alignment:
Q  229 atgtcaaaaggttaagtaaatacaagggttgtttcgcaatnnnnnnngatacatagactaaaacaaaaaatgcacgaacttgcgaggacgtttttcttat 328  Q
    ||||||||||||||||||||||||||||||||||| ||||       ||||||| |||||||||||||||||||| ||||| ||||||||||||||||||    
T  5975597 atgtcaaaaggttaagtaaatacaagggttgtttcacaatgaaaaaagatacatggactaaaacaaaaaatgcacaaacttacgaggacgtttttcttat 5975696  T
Q  329 ttaaaccaaaatattactaatatcacttacggtcaaactaagatatattta--gagtcaaactatcatttttactaaaaccacaattgataaaaatgaag 426  Q
    |||||||||||||||||||||||||||||| |||||||| |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||  |    
T  5975697 ttaaaccaaaatattactaatatcacttacagtcaaactcagatatatttatagagtcaaactatcatttttactaaaaccacaattgataaaaatg--g 5975794  T
Q  427 ttagttttaatatttttcaactttatatcaaacacacacttttgataagacataccaatttaacttctcttttctgtttgtacaaattcaagcagctttg 526  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  5975795 ttagttttaatatttttcaactttatatgaaacacacacttttgataagacataccaatttaacttttcttttctgtttgtacaaattcaagcagctttg 5975894  T
Q  527 atggacaccaaataa 541  Q
    |||||||||||||||    
T  5975895 atggacaccaaataa 5975909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 60
Target Start/End: Original strand, 5975394 - 5975437
Alignment:
Q  17 aagaagagagaaagaacatagtgaggaacaaggtggaaagaata 60  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  5975394 aagaagagagaaagaacataatgaggaacaaggtggaaagaata 5975437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 38758268 - 38758308
Alignment:
Q  227 caatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 267  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  38758268 caatttcaaaaggttaagtaaatacaagggttgtttcgcaa 38758308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 133 - 186
Target Start/End: Original strand, 5975510 - 5975564
Alignment:
Q  133 agtccctctactaaccagttgtcaactcatcaa-tgccacatattggtccgttaa 186  Q
    ||||||||||||||||||||| ||| ||||||| ||||| |||||||||||||||    
T  5975510 agtccctctactaaccagttgccaattcatcaagtgccatatattggtccgttaa 5975564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 13645214 - 13645260
Alignment:
Q  14 atgaagaagagagaaagaacatagtgaggaacaaggtggaaagaata 60  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||    
T  13645214 atgaagaagagagaaagaacatagtgaggaagaaggtggaaagaata 13645260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 133 - 191
Target Start/End: Complemental strand, 1677186 - 1677127
Alignment:
Q  133 agtccctctactaaccagttgtcaactcatca-atgccacatattggtccgttaatcagc 191  Q
    |||||||||| |||||| |||||||||||||| |||||||||||||||||||||| ||||    
T  1677186 agtccctctaataaccaattgtcaactcatcatatgccacatattggtccgttaaccagc 1677127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 1677305 - 1677259
Alignment:
Q  14 atgaagaagagagaaagaacatagtgaggaacaaggtggaaagaata 60  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||    
T  1677305 atgaagaagagagaaagaacatagtgaggaagaaggtggaaataata 1677259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 205 - 267
Target Start/End: Complemental strand, 3149392 - 3149330
Alignment:
Q  205 gacggaaacagctggccgagaacaatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 267  Q
    |||||||| ||  ||| |||| |||| ||||||||||||||||||||||||||||||||||||    
T  3149392 gacggaaatagacggcagagaccaatttcaaaaggttaagtaaatacaagggttgtttcgcaa 3149330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 332
Target Start/End: Complemental strand, 55196682 - 55196577
Alignment:
Q  228 aatgtcaaaaggttaagtaaatacaagggttgtttcgcaatnnnnnnn-gatacatagactaaaacaaaaaatgcacgaacttgcgaggacgtttttctt 326  Q
    |||||||||  |||||||||||||| ||||||||||||||         ||||||| ||||||||| |||||||| ||||||| | ||||| ||||||||    
T  55196682 aatgtcaaagtgttaagtaaatacaggggttgtttcgcaacaaaaaaaagatacatggactaaaaccaaaaatgcgcgaacttacaaggacctttttctt 55196583  T
Q  327 atttaa 332  Q
    ||||||    
T  55196582 atttaa 55196577  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 14 - 62
Target Start/End: Original strand, 26538698 - 26538746
Alignment:
Q  14 atgaagaagagagaaagaacatagtgaggaacaaggtggaaagaatagg 62  Q
    ||||||||||| ||||||||| ||||||||| |||||||||| ||||||    
T  26538698 atgaagaagagggaaagaacagagtgaggaagaaggtggaaaaaatagg 26538746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 195
Target Start/End: Original strand, 26538804 - 26538867
Alignment:
Q  133 agtccctctactaaccagttgtcaactcatcaa-tgccacatattggtccgttaatcagcaatg 195  Q
    ||||||||||||||||||||| ||||||||||| ||| || |||||||| ||||  ||||||||    
T  26538804 agtccctctactaaccagttgccaactcatcaagtgctacctattggtcagttagccagcaatg 26538867  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 232 - 267
Target Start/End: Original strand, 27662566 - 27662601
Alignment:
Q  232 tcaaaaggttaagtaaatacaagggttgtttcgcaa 267  Q
    ||||||||||||||||||||||||||||||| ||||    
T  27662566 tcaaaaggttaagtaaatacaagggttgttttgcaa 27662601  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 55196898 - 55196852
Alignment:
Q  14 atgaagaagagagaaagaacatagtgaggaacaaggtggaaagaata 60  Q
    ||||||||||||| || |||||||||||||| |||||||||| ||||    
T  55196898 atgaagaagagaggaataacatagtgaggaataaggtggaaataata 55196852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 195
Target Start/End: Original strand, 13645335 - 13645399
Alignment:
Q  133 agtccctctactaaccag-ttgtcaactcatcaa-tgccacatattggtccgttaatcagcaatg 195  Q
    |||||||||||||||||| || |||||||||||| ||||||||||| | ||||||  ||||||||    
T  13645335 agtccctctactaaccagtttatcaactcatcaagtgccacatattagcccgttagccagcaatg 13645399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 26538899 - 26538939
Alignment:
Q  227 caatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 267  Q
    ||||||||||||||||| ||||||||| |||| ||||||||    
T  26538899 caatgtcaaaaggttaaataaatacaaaggttatttcgcaa 26538939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 332
Target Start/End: Original strand, 7274603 - 7274707
Alignment:
Q  228 aatgtcaaaaggttaagtaaatacaagggttgtttcgcaatnnnnnnngatacatagactaaaacaaaaaatgcacgaacttgcgaggacgtttttctta 327  Q
    |||||||||| |||||||||||||| ||||||||||||||        ||||||   ||||||||||||||||| ||||||| |  |||| |||||||||    
T  7274603 aatgtcaaaatgttaagtaaatacaggggttgtttcgcaacaaaaaaagatacaggaactaaaacaaaaaatgcgcgaacttacagggacctttttctta 7274702  T
Q  328 tttaa 332  Q
    |||||    
T  7274703 tttaa 7274707  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 7274388 - 7274434
Alignment:
Q  14 atgaagaagagagaaagaacatagtgaggaacaaggtggaaagaata 60  Q
    |||||||||||||||| |||||||||||||| |||||||||| ||||    
T  7274388 atgaagaagagagaaataacatagtgaggaagaaggtggaaataata 7274434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 232 - 268
Target Start/End: Complemental strand, 45447109 - 45447073
Alignment:
Q  232 tcaaaaggttaagtaaatacaagggttgtttcgcaat 268  Q
    |||||| |||||| |||||||||||||||||||||||    
T  45447109 tcaaaaagttaagaaaatacaagggttgtttcgcaat 45447073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 133 - 332
Target Start/End: Complemental strand, 20946064 - 20945864
Alignment:
Q  133 agtccctctactaaccagttgtcaactcatca-atgccacatattggtccgttaatcagcaatgtannnnnnngacggaaacagctggccgagaacaatg 231  Q
    |||||||||| |||||| ||| |||||||||| |||||||||||| |||||||| ||||||| |         ||||||||| |   || | ||  ||||    
T  20946064 agtccctctaataaccaattgccaactcatcatatgccacatattagtccgttagtcagcaaagcgtttttttgacggaaacggacagcagggacgaatg 20945965  T
Q  232 tcaaaaggttaagtaaatacaagggttgtttcgcaatnnnnnnngatacatagactaaaacaaaaaatgcacgaacttgcgaggacgtttttcttattta 331  Q
     ||||| |||||||||||| | || |||||||||||        |||||| ||||||||||||||||||| ||||||| | | ||| |||||||||||||    
T  20945964 ccaaaatgttaagtaaatatagggattgtttcgcaacaaaaaaagatacaaagactaaaacaaaaaatgcgcgaacttacaaagacctttttcttattta 20945865  T
Q  332 a 332  Q
    |    
T  20945864 a 20945864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 11148458 - 11148418
Alignment:
Q  227 caatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 267  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  11148458 caatttcaaaaggttaagtaaatacaagggttgtttcgcaa 11148418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 20946183 - 20946137
Alignment:
Q  14 atgaagaagagagaaagaacatagtgaggaacaaggtggaaagaata 60  Q
    |||||||||||||||| |||||||||||||| |||||||||| ||||    
T  20946183 atgaagaagagagaaataacatagtgaggaagaaggtggaaataata 20946137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 229 - 267
Target Start/End: Complemental strand, 41245964 - 41245926
Alignment:
Q  229 atgtcaaaaggttaagtaaatacaagggttgtttcgcaa 267  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  41245964 atgtcaaaaggttaagtaaatataagggttgtttcgcaa 41245926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 228 - 332
Target Start/End: Complemental strand, 2671649 - 2671544
Alignment:
Q  228 aatgtcaaaaggttaagtaaatacaagggttgtttcgcaa-tnnnnnnngatacatagactaaaacaaaaaatgcacgaacttgcgaggacgtttttctt 326  Q
    |||||||||| |||||||||||||| ||||||||||||||         ||||||  ||||||||| |||||||| ||||||| |  |||| ||||||||    
T  2671649 aatgtcaaaatgttaagtaaatacaggggttgtttcgcaacaaaaaaaagatacagggactaaaaccaaaaatgcgcgaacttacagggacctttttctt 2671550  T
Q  327 atttaa 332  Q
    ||||||    
T  2671549 atttaa 2671544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 34539749 - 34539789
Alignment:
Q  227 caatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 267  Q
    |||| ||||||||||||||||||| ||||||||||||||||    
T  34539749 caatttcaaaaggttaagtaaatataagggttgtttcgcaa 34539789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 28167276 - 28167321
Alignment:
Q  222 gagaacaatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 267  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||    
T  28167276 gagaccaatttcaaaaggttaagtaaatacaagggttgtttcgcaa 28167321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Original strand, 5696106 - 5696152
Alignment:
Q  14 atgaagaagagagaaagaacatagtgaggaacaaggtggaaagaata 60  Q
    |||||||||||||||| |||||||||||||| |||||||||| ||||    
T  5696106 atgaagaagagagaaataacatagtgaggaagaaggtggaaataata 5696152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 205 - 268
Target Start/End: Original strand, 44906064 - 44906127
Alignment:
Q  205 gacggaaacagctggccgagaacaatgtcaaaaggttaagtaaatacaagggttgtttcgcaat 268  Q
    |||||||| ||  ||| |||| |||| |||||||||||||||||||||| | ||||||||||||    
T  44906064 gacggaaatagacggcagagaccaatttcaaaaggttaagtaaatacaaagattgtttcgcaat 44906127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 15 - 55
Target Start/End: Complemental strand, 30546072 - 30546032
Alignment:
Q  15 tgaagaagagagaaagaacatagtgaggaacaaggtggaaa 55  Q
    ||||||||||||||| |||| ||||||||| ||||||||||    
T  30546072 tgaagaagagagaaataacagagtgaggaagaaggtggaaa 30546032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 227 - 267
Target Start/End: Original strand, 6535593 - 6535633
Alignment:
Q  227 caatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 267  Q
    |||| ||||||||||||||||||||||||||||||||||||    
T  6535593 caatttcaaaaggttaagtaaatacaagggttgtttcgcaa 6535633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 14 - 60
Target Start/End: Complemental strand, 43882376 - 43882330
Alignment:
Q  14 atgaagaagagagaaagaacatagtgaggaacaaggtggaaagaata 60  Q
    |||||||||||||||| |||||||||||||| |||||||||| ||||    
T  43882376 atgaagaagagagaaataacatagtgaggaagaaggtggaaataata 43882330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 13223021 - 13222981
Alignment:
Q  227 caatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 267  Q
    |||| |||||||||||| |||||||||||||||||||||||    
T  13223021 caatttcaaaaggttaaataaatacaagggttgtttcgcaa 13222981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 217 - 267
Target Start/End: Complemental strand, 1134258 - 1134208
Alignment:
Q  217 tggccgagaacaatgtcaaaaggttaagtaaatacaagggttgtttcgcaa 267  Q
    |||| |||| |||| ||||||| |||||| |||||||||||||||||||||    
T  1134258 tggcagagaccaatttcaaaagattaagtgaatacaagggttgtttcgcaa 1134208  T

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