View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19838_low_7 (Length: 482)
Name: NF19838_low_7
Description: NF19838
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19838_low_7 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 8 - 402
Target Start/End: Complemental strand, 3683406 - 3683022
Alignment:
| Q |
8 |
tagcataggaacaatttttcggtgtcatgatatgaaaaatgatgatggtagcttgtgtacgtttcttcaattaataactaaacctataagtgtaaaagtg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3683406 |
tagcataggaacaatttttcggtgtcatgatatgaaaaatgatgatggtagcttgtgtacgtttcttcaattaataactaaacctataagtgtaaaagtg |
3683307 |
T |
|
| Q |
108 |
gaggctcaagtgagtttgtatgaaaataagaaatcactggactctatttatagtgttcatggtgttggatggttgatgaggtgtgtgtttatatgcccat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3683306 |
gaggctcaagtgagtttgtatgaaaataagaaatcactggactctatttatagtgttcatggtgttggatggttgatgaggtgtgtgtttatatgcccat |
3683207 |
T |
|
| Q |
208 |
cattataagtttaaaaatttggttannnnnnnnnnnnnnnnnnctctaaggtggactcatgactttcatatgttaaggctgagaattttagcactatagc |
307 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3683206 |
cattataagtttaataatttggttaatatata------------tctaaggtggactcatgactttcatatgttaaggctgagaattttagcactatagc |
3683119 |
T |
|
| Q |
308 |
aatactccgtgtgttggaagcttatgatttgtgaagttagatgggacctt--gagagaaatatatggatctactaaatagaaaagtcatatttgtga |
402 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
3683118 |
aatactccgtgtgttggaagcttatgatttgtgaagttagatgggaccttgagagagaaatctatggatctactaaatagaaaagtcatatttgtga |
3683022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 8 - 191
Target Start/End: Complemental strand, 3702190 - 3702005
Alignment:
| Q |
8 |
tagcataggaacaatttttcggtgtcatgatatgaaaaatgatgatggtagcttgtgtacgtttcttcaattaataactaaacctataagtgtaaaagtg |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
3702190 |
tagcataggaacaatttttcggtgtcatgatatgaaaagtgatgatggtagcttgtgtacgtttcttcggttaataactaaacctataattgtaaaagtg |
3702091 |
T |
|
| Q |
108 |
gaggctcaagtgagtttgtatgaaaataaga--aatcactggactctatttatagtgttcatggtgttggatggttgatgaggtgt |
191 |
Q |
| |
|
||||||||||||||||||||||||||||| | | | | || ||||||||||||||||||||||||||| | |||| ||||||||| |
|
|
| T |
3702090 |
gaggctcaagtgagtttgtatgaaaataaaaagattaattgtactctatttatagtgttcatggtgttgaaaggttaatgaggtgt |
3702005 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 393 - 466
Target Start/End: Complemental strand, 3682988 - 3682915
Alignment:
| Q |
393 |
atatttgtgagatccatataacttgggaatgaccaagatgctttcatttacttcactctcatagtagaaaaatc |
466 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
3682988 |
atatatgtgagatccatataacttgggaatgaccaagatgctttcatttacttcacactcatagtagaaaaatc |
3682915 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 319 - 374
Target Start/End: Complemental strand, 3701891 - 3701836
Alignment:
| Q |
319 |
tgttggaagcttatgatttgtgaagttagatgggaccttgagagaaatatatggat |
374 |
Q |
| |
|
||||||||||||||||||||| |||| || ||| ||||||||||||| ||||||| |
|
|
| T |
3701891 |
tgttggaagcttatgatttgtcaagtaaggcggggccttgagagaaatctatggat |
3701836 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University